Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21245

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21240 and BPHYT_RS21245 are separated by 688 nucleotidesBPHYT_RS21245 and BPHYT_RS21250 are separated by 239 nucleotides BPHYT_RS21240: BPHYT_RS21240 - LuxR family transcriptional regulator, at 325,754 to 326,458 _RS21240 BPHYT_RS21245: BPHYT_RS21245 - gluconolactonase, at 327,147 to 328,088 _RS21245 BPHYT_RS21250: BPHYT_RS21250 - ABC transporter substrate-binding protein, at 328,328 to 329,497 _RS21250 Position (kb) 327 328 329Strain fitness (log2 ratio) -2 -1 0 1at 326.172 kb on + strand, within BPHYT_RS21240at 326.173 kb on - strand, within BPHYT_RS21240at 326.286 kb on + strand, within BPHYT_RS21240at 326.286 kb on + strand, within BPHYT_RS21240at 326.287 kb on - strand, within BPHYT_RS21240at 326.290 kb on + strand, within BPHYT_RS21240at 326.290 kb on + strand, within BPHYT_RS21240at 326.290 kb on + strand, within BPHYT_RS21240at 326.310 kb on + strand, within BPHYT_RS21240at 326.310 kb on + strand, within BPHYT_RS21240at 326.310 kb on + strandat 326.310 kb on + strand, within BPHYT_RS21240at 326.314 kb on + strand, within BPHYT_RS21240at 326.314 kb on + strand, within BPHYT_RS21240at 326.314 kb on + strand, within BPHYT_RS21240at 326.315 kb on - strand, within BPHYT_RS21240at 326.325 kb on + strand, within BPHYT_RS21240at 326.326 kb on - strand, within BPHYT_RS21240at 326.326 kb on - strand, within BPHYT_RS21240at 326.326 kb on - strand, within BPHYT_RS21240at 326.563 kb on + strandat 326.563 kb on + strandat 326.569 kb on - strandat 326.700 kb on + strandat 326.700 kb on + strandat 326.753 kb on - strandat 326.768 kb on + strandat 326.853 kb on + strandat 326.874 kb on + strandat 326.900 kb on + strandat 326.994 kb on + strandat 327.246 kb on + strand, within BPHYT_RS21245at 327.247 kb on - strand, within BPHYT_RS21245at 327.304 kb on + strand, within BPHYT_RS21245at 327.304 kb on + strand, within BPHYT_RS21245at 327.402 kb on - strand, within BPHYT_RS21245at 327.468 kb on + strand, within BPHYT_RS21245at 327.598 kb on - strand, within BPHYT_RS21245at 327.736 kb on - strand, within BPHYT_RS21245at 327.736 kb on - strand, within BPHYT_RS21245at 327.736 kb on - strand, within BPHYT_RS21245at 327.736 kb on - strand, within BPHYT_RS21245at 327.935 kb on + strand, within BPHYT_RS21245at 327.936 kb on - strand, within BPHYT_RS21245at 327.936 kb on - strand, within BPHYT_RS21245at 328.047 kb on + strandat 328.056 kb on + strandat 328.264 kb on - strandat 328.264 kb on - strandat 328.266 kb on + strandat 328.267 kb on - strandat 328.369 kb on - strandat 328.369 kb on - strandat 328.703 kb on + strand, within BPHYT_RS21250at 328.765 kb on + strand, within BPHYT_RS21250at 328.791 kb on - strand, within BPHYT_RS21250at 328.791 kb on - strand, within BPHYT_RS21250

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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326,172 + BPHYT_RS21240 0.59 -0.4
326,173 - BPHYT_RS21240 0.59 -1.9
326,286 + BPHYT_RS21240 0.75 +0.4
326,286 + BPHYT_RS21240 0.75 +0.4
326,287 - BPHYT_RS21240 0.76 +0.4
326,290 + BPHYT_RS21240 0.76 -0.1
326,290 + BPHYT_RS21240 0.76 +0.1
326,290 + BPHYT_RS21240 0.76 -0.1
326,310 + BPHYT_RS21240 0.79 -0.8
326,310 + BPHYT_RS21240 0.79 -2.2
326,310 + +0.4
326,310 + BPHYT_RS21240 0.79 -0.1
326,314 + BPHYT_RS21240 0.79 +0.0
326,314 + BPHYT_RS21240 0.79 +0.2
326,314 + BPHYT_RS21240 0.79 -0.3
326,315 - BPHYT_RS21240 0.80 -1.2
326,325 + BPHYT_RS21240 0.81 -0.0
326,326 - BPHYT_RS21240 0.81 -0.3
326,326 - BPHYT_RS21240 0.81 -0.5
326,326 - BPHYT_RS21240 0.81 -0.2
326,563 + -0.8
326,563 + -0.6
326,569 - +0.4
326,700 + -0.5
326,700 + +1.4
326,753 - -1.4
326,768 + +1.4
326,853 + +0.2
326,874 + +0.7
326,900 + -0.5
326,994 + +0.7
327,246 + BPHYT_RS21245 0.11 -0.3
327,247 - BPHYT_RS21245 0.11 -1.0
327,304 + BPHYT_RS21245 0.17 -0.2
327,304 + BPHYT_RS21245 0.17 +0.2
327,402 - BPHYT_RS21245 0.27 -0.6
327,468 + BPHYT_RS21245 0.34 +0.4
327,598 - BPHYT_RS21245 0.48 +0.9
327,736 - BPHYT_RS21245 0.63 -1.0
327,736 - BPHYT_RS21245 0.63 -1.2
327,736 - BPHYT_RS21245 0.63 -0.8
327,736 - BPHYT_RS21245 0.63 -0.1
327,935 + BPHYT_RS21245 0.84 -1.2
327,936 - BPHYT_RS21245 0.84 -0.7
327,936 - BPHYT_RS21245 0.84 -0.2
328,047 + -0.6
328,056 + -0.1
328,264 - -0.2
328,264 - +0.4
328,266 + +0.8
328,267 - +1.2
328,369 - -0.7
328,369 - -0.5
328,703 + BPHYT_RS21250 0.32 -0.2
328,765 + BPHYT_RS21250 0.37 +0.1
328,791 - BPHYT_RS21250 0.40 -0.7
328,791 - BPHYT_RS21250 0.40 +0.2

Or see this region's nucleotide sequence