Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19100 and BPHYT_RS19105 overlap by 4 nucleotides BPHYT_RS19105 and BPHYT_RS19110 are separated by 2 nucleotides
BPHYT_RS19100: BPHYT_RS19100 - hypothetical protein, at 4,285,645 to 4,288,017
_RS19100
BPHYT_RS19105: BPHYT_RS19105 - aminotransferase, at 4,288,014 to 4,289,171
_RS19105
BPHYT_RS19110: BPHYT_RS19110 - 3-oxoacyl-ACP synthase, at 4,289,174 to 4,290,214
_RS19110
Position (kb) 4288
4289
4290 Strain fitness (log2 ratio) -2
-1
0
1 at 4287.208 kb on + strand, within BPHYT_RS19100 at 4287.327 kb on + strand, within BPHYT_RS19100 at 4287.346 kb on - strand, within BPHYT_RS19100 at 4287.352 kb on + strand, within BPHYT_RS19100 at 4287.352 kb on + strand, within BPHYT_RS19100 at 4287.353 kb on - strand, within BPHYT_RS19100 at 4287.591 kb on + strand, within BPHYT_RS19100 at 4287.592 kb on - strand, within BPHYT_RS19100 at 4287.614 kb on - strand, within BPHYT_RS19100 at 4287.614 kb on - strand, within BPHYT_RS19100 at 4287.669 kb on + strand, within BPHYT_RS19100 at 4287.703 kb on - strand, within BPHYT_RS19100 at 4287.963 kb on - strand at 4288.076 kb on + strand at 4288.077 kb on - strand at 4288.080 kb on + strand at 4288.081 kb on - strand at 4288.081 kb on - strand at 4288.206 kb on + strand, within BPHYT_RS19105 at 4288.309 kb on - strand, within BPHYT_RS19105 at 4288.507 kb on - strand, within BPHYT_RS19105 at 4288.507 kb on - strand, within BPHYT_RS19105 at 4288.960 kb on - strand, within BPHYT_RS19105 at 4288.986 kb on + strand, within BPHYT_RS19105 at 4288.987 kb on - strand, within BPHYT_RS19105 at 4288.987 kb on - strand, within BPHYT_RS19105 at 4288.999 kb on - strand, within BPHYT_RS19105 at 4289.004 kb on + strand, within BPHYT_RS19105 at 4289.004 kb on + strand, within BPHYT_RS19105 at 4289.031 kb on + strand, within BPHYT_RS19105 at 4289.456 kb on + strand, within BPHYT_RS19110 at 4289.456 kb on + strand, within BPHYT_RS19110 at 4289.457 kb on - strand, within BPHYT_RS19110 at 4289.550 kb on - strand, within BPHYT_RS19110 at 4289.550 kb on - strand, within BPHYT_RS19110 at 4289.550 kb on - strand, within BPHYT_RS19110 at 4289.631 kb on - strand, within BPHYT_RS19110 at 4289.639 kb on + strand, within BPHYT_RS19110 at 4289.876 kb on + strand, within BPHYT_RS19110 at 4289.876 kb on + strand, within BPHYT_RS19110 at 4289.876 kb on + strand, within BPHYT_RS19110 at 4289.876 kb on + strand, within BPHYT_RS19110 at 4289.876 kb on + strand, within BPHYT_RS19110 at 4289.877 kb on - strand, within BPHYT_RS19110
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 4,287,208 + BPHYT_RS19100 0.66 +0.8 4,287,327 + BPHYT_RS19100 0.71 -0.5 4,287,346 - BPHYT_RS19100 0.72 -0.7 4,287,352 + BPHYT_RS19100 0.72 -0.2 4,287,352 + BPHYT_RS19100 0.72 -1.0 4,287,353 - BPHYT_RS19100 0.72 -0.9 4,287,591 + BPHYT_RS19100 0.82 -1.5 4,287,592 - BPHYT_RS19100 0.82 +0.2 4,287,614 - BPHYT_RS19100 0.83 +0.1 4,287,614 - BPHYT_RS19100 0.83 -0.2 4,287,669 + BPHYT_RS19100 0.85 -0.8 4,287,703 - BPHYT_RS19100 0.87 +0.9 4,287,963 - -0.2 4,288,076 + -0.8 4,288,077 - +0.3 4,288,080 + -0.3 4,288,081 - -0.5 4,288,081 - -0.8 4,288,206 + BPHYT_RS19105 0.17 -1.9 4,288,309 - BPHYT_RS19105 0.25 -1.7 4,288,507 - BPHYT_RS19105 0.43 -1.0 4,288,507 - BPHYT_RS19105 0.43 -1.0 4,288,960 - BPHYT_RS19105 0.82 +0.2 4,288,986 + BPHYT_RS19105 0.84 +0.1 4,288,987 - BPHYT_RS19105 0.84 -1.3 4,288,987 - BPHYT_RS19105 0.84 -0.7 4,288,999 - BPHYT_RS19105 0.85 -0.5 4,289,004 + BPHYT_RS19105 0.85 -0.4 4,289,004 + BPHYT_RS19105 0.85 -0.5 4,289,031 + BPHYT_RS19105 0.88 -0.7 4,289,456 + BPHYT_RS19110 0.27 +0.5 4,289,456 + BPHYT_RS19110 0.27 -0.6 4,289,457 - BPHYT_RS19110 0.27 -1.0 4,289,550 - BPHYT_RS19110 0.36 -0.3 4,289,550 - BPHYT_RS19110 0.36 +1.5 4,289,550 - BPHYT_RS19110 0.36 -1.6 4,289,631 - BPHYT_RS19110 0.44 +1.1 4,289,639 + BPHYT_RS19110 0.45 -1.3 4,289,876 + BPHYT_RS19110 0.67 -1.0 4,289,876 + BPHYT_RS19110 0.67 -0.7 4,289,876 + BPHYT_RS19110 0.67 -0.3 4,289,876 + BPHYT_RS19110 0.67 -0.3 4,289,876 + BPHYT_RS19110 0.67 -2.2 4,289,877 - BPHYT_RS19110 0.68 -1.9
Or see this region's nucleotide sequence