Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18950 and BPHYT_RS18955 are separated by 15 nucleotides BPHYT_RS18955 and BPHYT_RS18960 are separated by 288 nucleotides BPHYT_RS18960 and BPHYT_RS18965 are separated by 1 nucleotides BPHYT_RS18965 and BPHYT_RS18970 are separated by 86 nucleotides
BPHYT_RS18950: BPHYT_RS18950 - hypothetical protein, at 4,257,029 to 4,258,318
_RS18950
BPHYT_RS18955: BPHYT_RS18955 - hypothetical protein, at 4,258,334 to 4,258,879
_RS18955
BPHYT_RS18960: BPHYT_RS18960 - chemotaxis protein CheZ, at 4,259,168 to 4,259,878
_RS18960
BPHYT_RS18965: BPHYT_RS18965 - chemotaxis protein CheY, at 4,259,880 to 4,260,275
_RS18965
BPHYT_RS18970: BPHYT_RS18970 - chemotaxis protein, at 4,260,362 to 4,261,450
_RS18970
Position (kb) 4259
4260 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4258.303 kb on + strand at 4258.303 kb on + strand at 4258.303 kb on + strand at 4258.303 kb on + strand at 4258.303 kb on + strand at 4258.303 kb on + strand at 4258.304 kb on - strand at 4258.332 kb on + strand at 4258.336 kb on - strand at 4258.506 kb on + strand, within BPHYT_RS18955 at 4258.519 kb on - strand, within BPHYT_RS18955 at 4258.647 kb on + strand, within BPHYT_RS18955 at 4258.647 kb on + strand, within BPHYT_RS18955 at 4258.648 kb on - strand, within BPHYT_RS18955 at 4258.648 kb on - strand, within BPHYT_RS18955 at 4258.742 kb on - strand, within BPHYT_RS18955 at 4258.742 kb on - strand, within BPHYT_RS18955 at 4258.937 kb on + strand at 4258.937 kb on + strand at 4258.937 kb on + strand at 4258.937 kb on + strand at 4258.938 kb on - strand at 4258.938 kb on - strand at 4258.938 kb on - strand at 4258.938 kb on - strand at 4258.938 kb on - strand at 4258.949 kb on - strand at 4259.046 kb on + strand at 4259.047 kb on - strand at 4259.047 kb on - strand at 4259.047 kb on - strand at 4259.049 kb on + strand at 4259.049 kb on + strand at 4259.049 kb on + strand at 4259.049 kb on + strand at 4259.049 kb on + strand at 4259.050 kb on - strand at 4259.050 kb on - strand at 4259.103 kb on + strand at 4259.103 kb on + strand at 4259.103 kb on + strand at 4259.103 kb on + strand at 4259.103 kb on + strand at 4259.103 kb on + strand at 4259.104 kb on - strand at 4259.104 kb on - strand at 4259.104 kb on - strand at 4259.104 kb on - strand at 4259.388 kb on + strand, within BPHYT_RS18960 at 4259.389 kb on - strand, within BPHYT_RS18960 at 4259.389 kb on - strand, within BPHYT_RS18960 at 4259.688 kb on + strand, within BPHYT_RS18960 at 4259.689 kb on - strand, within BPHYT_RS18960 at 4259.963 kb on - strand, within BPHYT_RS18965 at 4260.128 kb on - strand, within BPHYT_RS18965 at 4260.131 kb on + strand at 4260.365 kb on + strand at 4260.366 kb on - strand at 4260.491 kb on - strand, within BPHYT_RS18970 at 4260.491 kb on - strand, within BPHYT_RS18970 at 4260.520 kb on - strand, within BPHYT_RS18970 at 4260.520 kb on - strand, within BPHYT_RS18970 at 4260.689 kb on - strand, within BPHYT_RS18970 at 4260.689 kb on - strand, within BPHYT_RS18970 at 4260.689 kb on - strand, within BPHYT_RS18970 at 4260.690 kb on + strand, within BPHYT_RS18970 at 4260.690 kb on + strand, within BPHYT_RS18970 at 4260.691 kb on - strand, within BPHYT_RS18970 at 4260.691 kb on - strand, within BPHYT_RS18970 at 4260.691 kb on - strand, within BPHYT_RS18970 at 4260.741 kb on + strand, within BPHYT_RS18970 at 4260.741 kb on + strand, within BPHYT_RS18970 at 4260.741 kb on + strand, within BPHYT_RS18970 at 4260.741 kb on + strand, within BPHYT_RS18970 at 4260.741 kb on + strand, within BPHYT_RS18970 at 4260.741 kb on + strand, within BPHYT_RS18970 at 4260.742 kb on - strand, within BPHYT_RS18970 at 4260.742 kb on - strand, within BPHYT_RS18970 at 4260.742 kb on - strand, within BPHYT_RS18970 at 4260.742 kb on - strand, within BPHYT_RS18970 at 4260.742 kb on - strand, within BPHYT_RS18970 at 4260.784 kb on + strand, within BPHYT_RS18970 at 4260.791 kb on - strand, within BPHYT_RS18970 at 4260.847 kb on + strand, within BPHYT_RS18970 at 4260.847 kb on + strand, within BPHYT_RS18970 at 4260.847 kb on + strand, within BPHYT_RS18970 at 4260.848 kb on - strand, within BPHYT_RS18970 at 4260.848 kb on - strand, within BPHYT_RS18970 at 4260.848 kb on - strand, within BPHYT_RS18970
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 4,258,303 + -0.0 4,258,303 + -0.3 4,258,303 + +0.4 4,258,303 + -0.7 4,258,303 + +0.5 4,258,303 + +0.8 4,258,304 - -0.4 4,258,332 + -0.4 4,258,336 - +1.0 4,258,506 + BPHYT_RS18955 0.32 -0.1 4,258,519 - BPHYT_RS18955 0.34 +0.3 4,258,647 + BPHYT_RS18955 0.57 -0.4 4,258,647 + BPHYT_RS18955 0.57 +0.1 4,258,648 - BPHYT_RS18955 0.58 -0.2 4,258,648 - BPHYT_RS18955 0.58 +0.6 4,258,742 - BPHYT_RS18955 0.75 -0.0 4,258,742 - BPHYT_RS18955 0.75 -1.0 4,258,937 + -0.2 4,258,937 + -0.6 4,258,937 + +0.5 4,258,937 + -0.2 4,258,938 - -0.0 4,258,938 - -1.0 4,258,938 - +0.2 4,258,938 - -0.0 4,258,938 - +0.6 4,258,949 - +0.8 4,259,046 + -0.3 4,259,047 - +0.5 4,259,047 - -0.9 4,259,047 - +0.2 4,259,049 + +0.2 4,259,049 + +0.8 4,259,049 + +0.1 4,259,049 + +0.4 4,259,049 + +0.5 4,259,050 - +0.1 4,259,050 - -0.6 4,259,103 + -1.4 4,259,103 + -0.8 4,259,103 + -0.1 4,259,103 + +0.2 4,259,103 + +0.4 4,259,103 + +1.6 4,259,104 - +0.4 4,259,104 - +0.5 4,259,104 - -1.0 4,259,104 - +1.9 4,259,388 + BPHYT_RS18960 0.31 -1.5 4,259,389 - BPHYT_RS18960 0.31 +0.6 4,259,389 - BPHYT_RS18960 0.31 -0.8 4,259,688 + BPHYT_RS18960 0.73 -2.0 4,259,689 - BPHYT_RS18960 0.73 -0.6 4,259,963 - BPHYT_RS18965 0.21 -0.3 4,260,128 - BPHYT_RS18965 0.63 +0.2 4,260,131 + -2.5 4,260,365 + -0.2 4,260,366 - -0.9 4,260,491 - BPHYT_RS18970 0.12 -1.6 4,260,491 - BPHYT_RS18970 0.12 -1.7 4,260,520 - BPHYT_RS18970 0.15 -2.9 4,260,520 - BPHYT_RS18970 0.15 -2.3 4,260,689 - BPHYT_RS18970 0.30 -2.0 4,260,689 - BPHYT_RS18970 0.30 -2.2 4,260,689 - BPHYT_RS18970 0.30 -2.0 4,260,690 + BPHYT_RS18970 0.30 -2.0 4,260,690 + BPHYT_RS18970 0.30 -1.6 4,260,691 - BPHYT_RS18970 0.30 -1.5 4,260,691 - BPHYT_RS18970 0.30 -2.9 4,260,691 - BPHYT_RS18970 0.30 -2.3 4,260,741 + BPHYT_RS18970 0.35 -1.8 4,260,741 + BPHYT_RS18970 0.35 -2.0 4,260,741 + BPHYT_RS18970 0.35 -3.1 4,260,741 + BPHYT_RS18970 0.35 -3.1 4,260,741 + BPHYT_RS18970 0.35 -0.8 4,260,741 + BPHYT_RS18970 0.35 -1.0 4,260,742 - BPHYT_RS18970 0.35 -2.6 4,260,742 - BPHYT_RS18970 0.35 -0.5 4,260,742 - BPHYT_RS18970 0.35 -1.8 4,260,742 - BPHYT_RS18970 0.35 -0.5 4,260,742 - BPHYT_RS18970 0.35 -2.5 4,260,784 + BPHYT_RS18970 0.39 -0.5 4,260,791 - BPHYT_RS18970 0.39 -2.4 4,260,847 + BPHYT_RS18970 0.45 -3.1 4,260,847 + BPHYT_RS18970 0.45 -2.5 4,260,847 + BPHYT_RS18970 0.45 -1.5 4,260,848 - BPHYT_RS18970 0.45 -2.9 4,260,848 - BPHYT_RS18970 0.45 -0.9 4,260,848 - BPHYT_RS18970 0.45 -1.8
Or see this region's nucleotide sequence