Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18850 and BPHYT_RS18855 are separated by 337 nucleotides BPHYT_RS18855 and BPHYT_RS18860 are separated by 12 nucleotides
BPHYT_RS18850: BPHYT_RS18850 - Flagellar brake protein YcgR 1, at 4,236,882 to 4,237,655
_RS18850
BPHYT_RS18855: BPHYT_RS18855 - flagellar rod assembly protein FlgJ, at 4,237,993 to 4,238,991
_RS18855
BPHYT_RS18860: BPHYT_RS18860 - flagellar P-ring protein FlgI, at 4,239,004 to 4,240,191
_RS18860
Position (kb) 4237
4238
4239 Strain fitness (log2 ratio) -2
-1
0
1 at 4237.209 kb on + strand, within BPHYT_RS18850 at 4237.209 kb on + strand, within BPHYT_RS18850 at 4237.210 kb on - strand, within BPHYT_RS18850 at 4237.210 kb on - strand, within BPHYT_RS18850 at 4237.210 kb on - strand, within BPHYT_RS18850 at 4237.210 kb on - strand, within BPHYT_RS18850 at 4237.247 kb on - strand, within BPHYT_RS18850 at 4237.264 kb on + strand, within BPHYT_RS18850 at 4237.265 kb on - strand, within BPHYT_RS18850 at 4237.646 kb on + strand at 4237.647 kb on - strand at 4237.647 kb on - strand at 4237.650 kb on - strand at 4237.650 kb on - strand at 4237.650 kb on - strand at 4237.760 kb on + strand at 4237.760 kb on + strand at 4237.761 kb on - strand at 4237.761 kb on - strand at 4237.916 kb on + strand at 4237.917 kb on - strand at 4238.034 kb on - strand at 4238.148 kb on - strand, within BPHYT_RS18855 at 4238.169 kb on - strand, within BPHYT_RS18855 at 4238.223 kb on - strand, within BPHYT_RS18855 at 4238.223 kb on - strand, within BPHYT_RS18855 at 4238.223 kb on - strand, within BPHYT_RS18855 at 4238.422 kb on - strand, within BPHYT_RS18855 at 4238.496 kb on - strand, within BPHYT_RS18855 at 4238.653 kb on + strand, within BPHYT_RS18855 at 4238.654 kb on - strand, within BPHYT_RS18855 at 4238.980 kb on - strand at 4239.005 kb on + strand at 4239.005 kb on + strand at 4239.005 kb on + strand at 4239.005 kb on + strand at 4239.006 kb on - strand at 4239.006 kb on - strand at 4239.006 kb on - strand at 4239.088 kb on + strand at 4239.089 kb on - strand at 4239.089 kb on - strand at 4239.244 kb on - strand, within BPHYT_RS18860 at 4239.275 kb on - strand, within BPHYT_RS18860 at 4239.518 kb on + strand, within BPHYT_RS18860 at 4239.519 kb on - strand, within BPHYT_RS18860 at 4239.698 kb on + strand, within BPHYT_RS18860 at 4239.699 kb on - strand, within BPHYT_RS18860 at 4239.699 kb on - strand, within BPHYT_RS18860 at 4239.699 kb on - strand, within BPHYT_RS18860
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 4,237,209 + BPHYT_RS18850 0.42 -0.4 4,237,209 + BPHYT_RS18850 0.42 -1.6 4,237,210 - BPHYT_RS18850 0.42 -0.8 4,237,210 - BPHYT_RS18850 0.42 -0.5 4,237,210 - BPHYT_RS18850 0.42 +0.8 4,237,210 - BPHYT_RS18850 0.42 -1.0 4,237,247 - BPHYT_RS18850 0.47 +1.3 4,237,264 + BPHYT_RS18850 0.49 -1.3 4,237,265 - BPHYT_RS18850 0.49 -2.4 4,237,646 + -0.9 4,237,647 - -0.4 4,237,647 - +0.3 4,237,650 - +0.6 4,237,650 - -1.8 4,237,650 - -1.4 4,237,760 + -0.4 4,237,760 + -1.1 4,237,761 - -0.0 4,237,761 - +0.6 4,237,916 + -0.4 4,237,917 - -1.2 4,238,034 - -0.2 4,238,148 - BPHYT_RS18855 0.16 +0.3 4,238,169 - BPHYT_RS18855 0.18 -0.1 4,238,223 - BPHYT_RS18855 0.23 +0.6 4,238,223 - BPHYT_RS18855 0.23 +0.6 4,238,223 - BPHYT_RS18855 0.23 +0.1 4,238,422 - BPHYT_RS18855 0.43 +0.6 4,238,496 - BPHYT_RS18855 0.50 +0.7 4,238,653 + BPHYT_RS18855 0.66 +1.2 4,238,654 - BPHYT_RS18855 0.66 +0.1 4,238,980 - -0.8 4,239,005 + -0.3 4,239,005 + -0.6 4,239,005 + -0.4 4,239,005 + +0.1 4,239,006 - +0.2 4,239,006 - -0.6 4,239,006 - +0.2 4,239,088 + -1.0 4,239,089 - +0.2 4,239,089 - -1.0 4,239,244 - BPHYT_RS18860 0.20 +0.6 4,239,275 - BPHYT_RS18860 0.23 -0.4 4,239,518 + BPHYT_RS18860 0.43 -0.9 4,239,519 - BPHYT_RS18860 0.43 +0.6 4,239,698 + BPHYT_RS18860 0.58 -0.6 4,239,699 - BPHYT_RS18860 0.59 -0.4 4,239,699 - BPHYT_RS18860 0.59 -0.7 4,239,699 - BPHYT_RS18860 0.59 +0.2
Or see this region's nucleotide sequence