Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS18240

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS18235 and BPHYT_RS18240 are separated by 499 nucleotidesBPHYT_RS18240 and BPHYT_RS18245 are separated by 91 nucleotides BPHYT_RS18235: BPHYT_RS18235 - 16S ribosomal RNA, at 4,100,124 to 4,101,718 _RS18235 BPHYT_RS18240: BPHYT_RS18240 - GDSL family lipase, at 4,102,218 to 4,103,486 _RS18240 BPHYT_RS18245: BPHYT_RS18245 - hypothetical protein, at 4,103,578 to 4,105,200 _RS18245 Position (kb) 4102 4103 4104Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4102.166 kb on - strandat 4102.183 kb on - strandat 4102.183 kb on - strandat 4102.183 kb on - strandat 4102.240 kb on - strandat 4102.277 kb on - strandat 4102.502 kb on + strand, within BPHYT_RS18240at 4102.915 kb on + strand, within BPHYT_RS18240at 4102.915 kb on + strand, within BPHYT_RS18240at 4102.915 kb on + strand, within BPHYT_RS18240at 4102.915 kb on + strand, within BPHYT_RS18240at 4102.915 kb on + strand, within BPHYT_RS18240at 4102.915 kb on + strand, within BPHYT_RS18240at 4102.916 kb on - strand, within BPHYT_RS18240at 4102.916 kb on - strand, within BPHYT_RS18240at 4102.916 kb on - strand, within BPHYT_RS18240at 4102.916 kb on - strand, within BPHYT_RS18240at 4102.916 kb on - strand, within BPHYT_RS18240at 4102.916 kb on - strand, within BPHYT_RS18240at 4102.916 kb on - strand, within BPHYT_RS18240at 4102.985 kb on - strand, within BPHYT_RS18240at 4103.056 kb on + strand, within BPHYT_RS18240at 4103.056 kb on + strand, within BPHYT_RS18240at 4103.057 kb on - strand, within BPHYT_RS18240at 4103.213 kb on + strand, within BPHYT_RS18240at 4103.244 kb on - strand, within BPHYT_RS18240at 4103.244 kb on - strand, within BPHYT_RS18240at 4103.281 kb on + strand, within BPHYT_RS18240at 4103.717 kb on + strandat 4103.717 kb on + strandat 4103.717 kb on + strandat 4103.718 kb on - strandat 4103.718 kb on - strandat 4103.838 kb on + strand, within BPHYT_RS18245at 4103.839 kb on - strandat 4103.852 kb on + strand, within BPHYT_RS18245at 4103.852 kb on + strand, within BPHYT_RS18245at 4103.852 kb on + strand, within BPHYT_RS18245at 4103.852 kb on + strand, within BPHYT_RS18245at 4103.853 kb on - strand, within BPHYT_RS18245at 4103.853 kb on - strand, within BPHYT_RS18245at 4103.880 kb on + strand, within BPHYT_RS18245at 4103.976 kb on + strand, within BPHYT_RS18245at 4103.976 kb on + strand, within BPHYT_RS18245at 4103.977 kb on - strand, within BPHYT_RS18245at 4103.977 kb on - strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.978 kb on + strand, within BPHYT_RS18245at 4103.979 kb on - strand, within BPHYT_RS18245at 4103.979 kb on - strand, within BPHYT_RS18245at 4103.979 kb on - strand, within BPHYT_RS18245at 4103.979 kb on - strand, within BPHYT_RS18245at 4103.979 kb on - strand, within BPHYT_RS18245at 4103.979 kb on - strand, within BPHYT_RS18245at 4103.982 kb on + strand, within BPHYT_RS18245at 4103.983 kb on - strand, within BPHYT_RS18245at 4104.072 kb on + strand, within BPHYT_RS18245at 4104.116 kb on + strand, within BPHYT_RS18245at 4104.117 kb on - strand, within BPHYT_RS18245at 4104.201 kb on - strand, within BPHYT_RS18245at 4104.237 kb on + strand, within BPHYT_RS18245at 4104.237 kb on + strand, within BPHYT_RS18245at 4104.238 kb on - strand, within BPHYT_RS18245at 4104.238 kb on - strand, within BPHYT_RS18245at 4104.238 kb on - strand, within BPHYT_RS18245at 4104.238 kb on - strand, within BPHYT_RS18245at 4104.238 kb on - strand, within BPHYT_RS18245at 4104.238 kb on - strand, within BPHYT_RS18245at 4104.238 kb on - strand, within BPHYT_RS18245at 4104.238 kb on - strand, within BPHYT_RS18245at 4104.238 kb on - strand, within BPHYT_RS18245at 4104.239 kb on + strand, within BPHYT_RS18245at 4104.239 kb on + strand, within BPHYT_RS18245at 4104.240 kb on - strand, within BPHYT_RS18245at 4104.240 kb on - strand, within BPHYT_RS18245at 4104.240 kb on - strand, within BPHYT_RS18245at 4104.351 kb on + strand, within BPHYT_RS18245at 4104.352 kb on - strand, within BPHYT_RS18245at 4104.353 kb on + strand, within BPHYT_RS18245at 4104.353 kb on + strand, within BPHYT_RS18245at 4104.353 kb on + strand, within BPHYT_RS18245at 4104.354 kb on - strand, within BPHYT_RS18245at 4104.396 kb on + strand, within BPHYT_RS18245

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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4,102,166 - +0.2
4,102,183 - +0.1
4,102,183 - -0.0
4,102,183 - -0.1
4,102,240 - -1.0
4,102,277 - -0.5
4,102,502 + BPHYT_RS18240 0.22 +1.6
4,102,915 + BPHYT_RS18240 0.55 +0.2
4,102,915 + BPHYT_RS18240 0.55 +0.3
4,102,915 + BPHYT_RS18240 0.55 +0.9
4,102,915 + BPHYT_RS18240 0.55 +0.2
4,102,915 + BPHYT_RS18240 0.55 -0.2
4,102,915 + BPHYT_RS18240 0.55 +0.6
4,102,916 - BPHYT_RS18240 0.55 -0.4
4,102,916 - BPHYT_RS18240 0.55 +0.1
4,102,916 - BPHYT_RS18240 0.55 -0.3
4,102,916 - BPHYT_RS18240 0.55 -1.3
4,102,916 - BPHYT_RS18240 0.55 -0.2
4,102,916 - BPHYT_RS18240 0.55 -0.4
4,102,916 - BPHYT_RS18240 0.55 +0.4
4,102,985 - BPHYT_RS18240 0.60 -0.4
4,103,056 + BPHYT_RS18240 0.66 -0.8
4,103,056 + BPHYT_RS18240 0.66 -0.7
4,103,057 - BPHYT_RS18240 0.66 +0.1
4,103,213 + BPHYT_RS18240 0.78 -0.7
4,103,244 - BPHYT_RS18240 0.81 +1.4
4,103,244 - BPHYT_RS18240 0.81 +0.6
4,103,281 + BPHYT_RS18240 0.84 +0.4
4,103,717 + +0.6
4,103,717 + +0.6
4,103,717 + +0.1
4,103,718 - -0.3
4,103,718 - -0.2
4,103,838 + BPHYT_RS18245 0.16 +0.0
4,103,839 - +0.2
4,103,852 + BPHYT_RS18245 0.17 +0.5
4,103,852 + BPHYT_RS18245 0.17 +0.6
4,103,852 + BPHYT_RS18245 0.17 +1.0
4,103,852 + BPHYT_RS18245 0.17 -0.5
4,103,853 - BPHYT_RS18245 0.17 -0.4
4,103,853 - BPHYT_RS18245 0.17 -0.4
4,103,880 + BPHYT_RS18245 0.19 +0.2
4,103,976 + BPHYT_RS18245 0.25 -0.2
4,103,976 + BPHYT_RS18245 0.25 -0.2
4,103,977 - BPHYT_RS18245 0.25 +0.1
4,103,977 - BPHYT_RS18245 0.25 -0.8
4,103,978 + BPHYT_RS18245 0.25 +0.2
4,103,978 + BPHYT_RS18245 0.25 +0.2
4,103,978 + BPHYT_RS18245 0.25 +1.2
4,103,978 + BPHYT_RS18245 0.25 -0.1
4,103,978 + BPHYT_RS18245 0.25 -0.8
4,103,978 + BPHYT_RS18245 0.25 -1.6
4,103,978 + BPHYT_RS18245 0.25 -0.6
4,103,978 + BPHYT_RS18245 0.25 +0.6
4,103,978 + BPHYT_RS18245 0.25 +0.6
4,103,978 + BPHYT_RS18245 0.25 +0.0
4,103,978 + BPHYT_RS18245 0.25 +0.3
4,103,978 + BPHYT_RS18245 0.25 -0.6
4,103,978 + BPHYT_RS18245 0.25 -0.3
4,103,978 + BPHYT_RS18245 0.25 -0.2
4,103,978 + BPHYT_RS18245 0.25 -0.0
4,103,979 - BPHYT_RS18245 0.25 +0.2
4,103,979 - BPHYT_RS18245 0.25 +0.1
4,103,979 - BPHYT_RS18245 0.25 +2.9
4,103,979 - BPHYT_RS18245 0.25 -0.0
4,103,979 - BPHYT_RS18245 0.25 +0.5
4,103,979 - BPHYT_RS18245 0.25 -0.2
4,103,982 + BPHYT_RS18245 0.25 +0.6
4,103,983 - BPHYT_RS18245 0.25 +0.3
4,104,072 + BPHYT_RS18245 0.30 +0.6
4,104,116 + BPHYT_RS18245 0.33 -0.4
4,104,117 - BPHYT_RS18245 0.33 -0.2
4,104,201 - BPHYT_RS18245 0.38 -0.0
4,104,237 + BPHYT_RS18245 0.41 +0.1
4,104,237 + BPHYT_RS18245 0.41 -0.4
4,104,238 - BPHYT_RS18245 0.41 +2.2
4,104,238 - BPHYT_RS18245 0.41 +0.6
4,104,238 - BPHYT_RS18245 0.41 -0.2
4,104,238 - BPHYT_RS18245 0.41 -0.6
4,104,238 - BPHYT_RS18245 0.41 +0.1
4,104,238 - BPHYT_RS18245 0.41 +0.2
4,104,238 - BPHYT_RS18245 0.41 +0.6
4,104,238 - BPHYT_RS18245 0.41 +0.7
4,104,238 - BPHYT_RS18245 0.41 -2.7
4,104,239 + BPHYT_RS18245 0.41 -1.3
4,104,239 + BPHYT_RS18245 0.41 -0.0
4,104,240 - BPHYT_RS18245 0.41 +0.2
4,104,240 - BPHYT_RS18245 0.41 +0.1
4,104,240 - BPHYT_RS18245 0.41 +2.4
4,104,351 + BPHYT_RS18245 0.48 +0.4
4,104,352 - BPHYT_RS18245 0.48 +0.4
4,104,353 + BPHYT_RS18245 0.48 -0.4
4,104,353 + BPHYT_RS18245 0.48 +3.2
4,104,353 + BPHYT_RS18245 0.48 -0.9
4,104,354 - BPHYT_RS18245 0.48 -1.0
4,104,396 + BPHYT_RS18245 0.50 -1.0

Or see this region's nucleotide sequence