Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18220 and BPHYT_RS18225 are separated by 314 nucleotides BPHYT_RS18225 and BPHYT_RS18230 are separated by 68 nucleotides BPHYT_RS18230 and BPHYT_RS18235 are separated by 17 nucleotides BPHYT_RS18235 and BPHYT_RS18240 are separated by 499 nucleotides
BPHYT_RS18220: BPHYT_RS18220 - 23S ribosomal RNA, at 4,096,670 to 4,099,571
_RS18220
BPHYT_RS18225: BPHYT_RS18225 - tRNA-Ala, at 4,099,886 to 4,099,961
_RS18225
BPHYT_RS18230: BPHYT_RS18230 - tRNA-Ile, at 4,100,030 to 4,100,106
_RS18230
BPHYT_RS18235: BPHYT_RS18235 - 16S ribosomal RNA, at 4,100,124 to 4,101,718
_RS18235
BPHYT_RS18240: BPHYT_RS18240 - GDSL family lipase, at 4,102,218 to 4,103,486
_RS18240
Position (kb) 4100
4101
4102 Strain fitness (log2 ratio) -1
0
1 at 4102.166 kb on - strand at 4102.183 kb on - strand at 4102.183 kb on - strand at 4102.183 kb on - strand at 4102.240 kb on - strand at 4102.277 kb on - strand at 4102.502 kb on + strand, within BPHYT_RS18240
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 4,102,166 - +0.2 4,102,183 - +0.1 4,102,183 - -0.0 4,102,183 - -0.1 4,102,240 - -1.0 4,102,277 - -0.5 4,102,502 + BPHYT_RS18240 0.22 +1.6
Or see this region's nucleotide sequence