Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07915 and BPHYT_RS07920 are separated by 3 nucleotides BPHYT_RS07920 and BPHYT_RS07925 are separated by 142 nucleotides BPHYT_RS07925 and BPHYT_RS07930 are separated by 330 nucleotides BPHYT_RS07930 and BPHYT_RS07935 are separated by 87 nucleotides
BPHYT_RS07915: BPHYT_RS07915 - histidine kinase, at 1,802,178 to 1,803,926
_RS07915
BPHYT_RS07920: BPHYT_RS07920 - hypothetical protein, at 1,803,930 to 1,804,253
_RS07920
BPHYT_RS07925: BPHYT_RS07925 - glutamine amidotransferase, at 1,804,396 to 1,804,977
_RS07925
BPHYT_RS07930: BPHYT_RS07930 - hypothetical protein, at 1,805,308 to 1,805,754
_RS07930
BPHYT_RS07935: BPHYT_RS07935 - Rrf2 family transcriptional regulator, at 1,805,842 to 1,806,297
_RS07935
Position (kb) 1804
1805 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1803.469 kb on - strand, within BPHYT_RS07915 at 1803.735 kb on + strand, within BPHYT_RS07915 at 1803.736 kb on - strand, within BPHYT_RS07915 at 1803.985 kb on + strand, within BPHYT_RS07920 at 1804.269 kb on - strand at 1804.287 kb on - strand at 1804.697 kb on + strand, within BPHYT_RS07925 at 1805.044 kb on + strand at 1805.045 kb on - strand at 1805.295 kb on - strand at 1805.449 kb on + strand, within BPHYT_RS07930 at 1805.449 kb on + strand, within BPHYT_RS07930 at 1805.449 kb on + strand, within BPHYT_RS07930 at 1805.450 kb on - strand, within BPHYT_RS07930 at 1805.450 kb on - strand, within BPHYT_RS07930
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,803,469 - BPHYT_RS07915 0.74 -3.1 1,803,735 + BPHYT_RS07915 0.89 -0.0 1,803,736 - BPHYT_RS07915 0.89 +0.4 1,803,985 + BPHYT_RS07920 0.17 +0.4 1,804,269 - +0.3 1,804,287 - +0.3 1,804,697 + BPHYT_RS07925 0.52 +0.6 1,805,044 + -0.0 1,805,045 - +0.2 1,805,295 - +0.8 1,805,449 + BPHYT_RS07930 0.32 -0.3 1,805,449 + BPHYT_RS07930 0.32 -0.7 1,805,449 + BPHYT_RS07930 0.32 -0.1 1,805,450 - BPHYT_RS07930 0.32 +0.4 1,805,450 - BPHYT_RS07930 0.32 +0.1
Or see this region's nucleotide sequence