Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07320 and BPHYT_RS07325 are separated by 50 nucleotides BPHYT_RS07325 and BPHYT_RS07330 are separated by 276 nucleotides BPHYT_RS07330 and BPHYT_RS07335 are separated by 38 nucleotides
BPHYT_RS07320: BPHYT_RS07320 - dihydrodipicolinate synthetase, at 1,660,655 to 1,661,563
_RS07320
BPHYT_RS07325: BPHYT_RS07325 - GntR family transcriptional regulator, at 1,661,614 to 1,662,273
_RS07325
BPHYT_RS07330: BPHYT_RS07330 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 1,662,550 to 1,663,470
_RS07330
BPHYT_RS07335: BPHYT_RS07335 - nitrate ABC transporter permease, at 1,663,509 to 1,664,576
_RS07335
Position (kb) 1662
1663
1664 Strain fitness (log2 ratio) -1
0
1
2 at 1661.907 kb on - strand, within BPHYT_RS07325 at 1662.361 kb on - strand at 1662.476 kb on + strand at 1662.908 kb on - strand, within BPHYT_RS07330 at 1662.908 kb on - strand, within BPHYT_RS07330 at 1662.908 kb on - strand, within BPHYT_RS07330 at 1662.957 kb on - strand, within BPHYT_RS07330 at 1663.270 kb on - strand, within BPHYT_RS07330 at 1663.270 kb on - strand, within BPHYT_RS07330 at 1663.270 kb on - strand, within BPHYT_RS07330 at 1663.309 kb on + strand, within BPHYT_RS07330 at 1663.737 kb on + strand, within BPHYT_RS07335 at 1664.208 kb on + strand, within BPHYT_RS07335 at 1664.209 kb on - strand, within BPHYT_RS07335 at 1664.314 kb on - strand, within BPHYT_RS07335
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,661,907 - BPHYT_RS07325 0.44 -1.7 1,662,361 - -1.6 1,662,476 + -0.9 1,662,908 - BPHYT_RS07330 0.39 +0.4 1,662,908 - BPHYT_RS07330 0.39 +1.0 1,662,908 - BPHYT_RS07330 0.39 +0.7 1,662,957 - BPHYT_RS07330 0.44 +0.7 1,663,270 - BPHYT_RS07330 0.78 -0.8 1,663,270 - BPHYT_RS07330 0.78 +2.0 1,663,270 - BPHYT_RS07330 0.78 +1.4 1,663,309 + BPHYT_RS07330 0.82 -0.8 1,663,737 + BPHYT_RS07335 0.21 +0.6 1,664,208 + BPHYT_RS07335 0.65 -0.6 1,664,209 - BPHYT_RS07335 0.66 +0.7 1,664,314 - BPHYT_RS07335 0.75 +0.1
Or see this region's nucleotide sequence