Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07000 and BPHYT_RS07005 are separated by 219 nucleotides BPHYT_RS07005 and BPHYT_RS07010 are separated by 22 nucleotides BPHYT_RS07010 and BPHYT_RS07015 are separated by 60 nucleotides BPHYT_RS07015 and BPHYT_RS07020 are separated by 110 nucleotides
BPHYT_RS07000: BPHYT_RS07000 - acetyl-CoA synthetase, at 1,582,248 to 1,584,230
_RS07000
BPHYT_RS07005: BPHYT_RS07005 - membrane protein, at 1,584,450 to 1,584,740
_RS07005
BPHYT_RS07010: BPHYT_RS07010 - sodium:solute symporter, at 1,584,763 to 1,586,781
_RS07010
BPHYT_RS07015: BPHYT_RS07015 - tRNA-Ser, at 1,586,842 to 1,586,932
_RS07015
BPHYT_RS07020: BPHYT_RS07020 - acyltransferase, at 1,587,043 to 1,588,176
_RS07020
Position (kb) 1584
1585
1586
1587 Strain fitness (log2 ratio) -2
-1
0
1 at 1584.229 kb on - strand at 1584.263 kb on + strand at 1584.371 kb on + strand at 1584.371 kb on + strand at 1584.472 kb on - strand at 1584.597 kb on + strand, within BPHYT_RS07005 at 1584.648 kb on + strand, within BPHYT_RS07005 at 1584.649 kb on - strand, within BPHYT_RS07005 at 1584.649 kb on - strand, within BPHYT_RS07005 at 1584.829 kb on + strand at 1584.830 kb on - strand at 1584.830 kb on - strand at 1584.830 kb on - strand at 1584.880 kb on + strand at 1584.881 kb on - strand at 1584.910 kb on + strand at 1584.911 kb on - strand at 1584.911 kb on - strand at 1585.058 kb on - strand, within BPHYT_RS07010 at 1585.058 kb on - strand, within BPHYT_RS07010 at 1585.058 kb on - strand, within BPHYT_RS07010 at 1585.486 kb on + strand, within BPHYT_RS07010 at 1586.000 kb on - strand, within BPHYT_RS07010 at 1586.043 kb on - strand, within BPHYT_RS07010 at 1586.330 kb on - strand, within BPHYT_RS07010 at 1586.332 kb on + strand, within BPHYT_RS07010 at 1586.333 kb on - strand, within BPHYT_RS07010 at 1586.419 kb on + strand, within BPHYT_RS07010 at 1586.420 kb on - strand, within BPHYT_RS07010 at 1586.437 kb on - strand, within BPHYT_RS07010 at 1586.584 kb on + strand at 1586.585 kb on - strand at 1586.585 kb on - strand at 1586.587 kb on + strand at 1586.588 kb on - strand at 1586.745 kb on + strand at 1586.764 kb on + strand at 1586.764 kb on + strand at 1586.765 kb on - strand at 1586.766 kb on + strand at 1586.766 kb on + strand at 1586.944 kb on + strand at 1587.082 kb on + strand at 1587.151 kb on + strand at 1587.204 kb on + strand, within BPHYT_RS07020 at 1587.205 kb on - strand, within BPHYT_RS07020 at 1587.435 kb on - strand, within BPHYT_RS07020 at 1587.544 kb on + strand, within BPHYT_RS07020 at 1587.545 kb on - strand, within BPHYT_RS07020 at 1587.545 kb on - strand, within BPHYT_RS07020 at 1587.545 kb on - strand, within BPHYT_RS07020 at 1587.729 kb on - strand, within BPHYT_RS07020
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,584,229 - -0.2 1,584,263 + +1.0 1,584,371 + +0.4 1,584,371 + -0.6 1,584,472 - +0.4 1,584,597 + BPHYT_RS07005 0.51 -0.2 1,584,648 + BPHYT_RS07005 0.68 -0.1 1,584,649 - BPHYT_RS07005 0.68 +0.2 1,584,649 - BPHYT_RS07005 0.68 -0.3 1,584,829 + +0.4 1,584,830 - -0.1 1,584,830 - -2.3 1,584,830 - -0.7 1,584,880 + +0.0 1,584,881 - +0.2 1,584,910 + -0.8 1,584,911 - -1.9 1,584,911 - -0.2 1,585,058 - BPHYT_RS07010 0.15 -0.1 1,585,058 - BPHYT_RS07010 0.15 -0.4 1,585,058 - BPHYT_RS07010 0.15 -0.3 1,585,486 + BPHYT_RS07010 0.36 -0.4 1,586,000 - BPHYT_RS07010 0.61 -0.4 1,586,043 - BPHYT_RS07010 0.63 +0.1 1,586,330 - BPHYT_RS07010 0.78 -1.1 1,586,332 + BPHYT_RS07010 0.78 +0.3 1,586,333 - BPHYT_RS07010 0.78 -0.4 1,586,419 + BPHYT_RS07010 0.82 -0.4 1,586,420 - BPHYT_RS07010 0.82 -0.5 1,586,437 - BPHYT_RS07010 0.83 +0.4 1,586,584 + +1.2 1,586,585 - -0.0 1,586,585 - -0.1 1,586,587 + +0.6 1,586,588 - -0.4 1,586,745 + -0.0 1,586,764 + -0.2 1,586,764 + -0.9 1,586,765 - +0.4 1,586,766 + +0.2 1,586,766 + -0.3 1,586,944 + -0.4 1,587,082 + -1.1 1,587,151 + -1.5 1,587,204 + BPHYT_RS07020 0.14 +1.1 1,587,205 - BPHYT_RS07020 0.14 -0.1 1,587,435 - BPHYT_RS07020 0.35 -0.6 1,587,544 + BPHYT_RS07020 0.44 -0.7 1,587,545 - BPHYT_RS07020 0.44 +0.3 1,587,545 - BPHYT_RS07020 0.44 -0.9 1,587,545 - BPHYT_RS07020 0.44 -0.2 1,587,729 - BPHYT_RS07020 0.60 +0.4
Or see this region's nucleotide sequence