Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06910 and BPHYT_RS06915 are separated by 165 nucleotides BPHYT_RS06915 and BPHYT_RS06920 are separated by 69 nucleotides BPHYT_RS06920 and BPHYT_RS06925 overlap by 4 nucleotides
BPHYT_RS06910: BPHYT_RS06910 - membrane protein, at 1,566,485 to 1,567,033
_RS06910
BPHYT_RS06915: BPHYT_RS06915 - hypothetical protein, at 1,567,199 to 1,567,531
_RS06915
BPHYT_RS06920: BPHYT_RS06920 - iron permease FTR1, at 1,567,601 to 1,568,446
_RS06920
BPHYT_RS06925: BPHYT_RS06925 - membrane protein, at 1,568,443 to 1,569,849
_RS06925
Position (kb) 1567
1568 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1566.251 kb on + strand at 1566.251 kb on + strand at 1566.263 kb on - strand at 1566.325 kb on - strand at 1566.357 kb on - strand at 1566.614 kb on + strand, within BPHYT_RS06910 at 1566.614 kb on + strand, within BPHYT_RS06910 at 1566.762 kb on - strand, within BPHYT_RS06910 at 1566.875 kb on + strand, within BPHYT_RS06910 at 1566.875 kb on + strand, within BPHYT_RS06910 at 1566.876 kb on - strand, within BPHYT_RS06910 at 1566.989 kb on + strand at 1567.059 kb on - strand at 1567.345 kb on + strand, within BPHYT_RS06915 at 1567.345 kb on + strand, within BPHYT_RS06915 at 1567.529 kb on + strand at 1567.530 kb on - strand at 1567.614 kb on + strand at 1567.615 kb on - strand at 1567.716 kb on - strand, within BPHYT_RS06920 at 1567.968 kb on + strand, within BPHYT_RS06920 at 1567.968 kb on + strand, within BPHYT_RS06920 at 1568.015 kb on + strand, within BPHYT_RS06920 at 1568.105 kb on + strand, within BPHYT_RS06920 at 1568.105 kb on + strand, within BPHYT_RS06920 at 1568.105 kb on + strand, within BPHYT_RS06920 at 1568.106 kb on - strand, within BPHYT_RS06920 at 1568.107 kb on + strand, within BPHYT_RS06920 at 1568.108 kb on - strand, within BPHYT_RS06920 at 1568.384 kb on + strand at 1568.448 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,566,251 + +0.4 1,566,251 + +0.2 1,566,263 - -0.1 1,566,325 - +0.4 1,566,357 - -1.9 1,566,614 + BPHYT_RS06910 0.23 +0.4 1,566,614 + BPHYT_RS06910 0.23 -0.7 1,566,762 - BPHYT_RS06910 0.50 -0.4 1,566,875 + BPHYT_RS06910 0.71 +0.4 1,566,875 + BPHYT_RS06910 0.71 -0.3 1,566,876 - BPHYT_RS06910 0.71 -0.2 1,566,989 + -1.1 1,567,059 - +0.9 1,567,345 + BPHYT_RS06915 0.44 +0.9 1,567,345 + BPHYT_RS06915 0.44 -2.1 1,567,529 + -0.8 1,567,530 - +0.7 1,567,614 + -0.4 1,567,615 - +1.1 1,567,716 - BPHYT_RS06920 0.14 -0.3 1,567,968 + BPHYT_RS06920 0.43 +0.0 1,567,968 + BPHYT_RS06920 0.43 -0.9 1,568,015 + BPHYT_RS06920 0.49 +0.2 1,568,105 + BPHYT_RS06920 0.60 -1.1 1,568,105 + BPHYT_RS06920 0.60 +1.4 1,568,105 + BPHYT_RS06920 0.60 -0.1 1,568,106 - BPHYT_RS06920 0.60 +2.2 1,568,107 + BPHYT_RS06920 0.60 +0.4 1,568,108 - BPHYT_RS06920 0.60 -2.4 1,568,384 + -2.1 1,568,448 + -0.6
Or see this region's nucleotide sequence