Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05615 and BPHYT_RS05620 are separated by 176 nucleotides BPHYT_RS05620 and BPHYT_RS05625 are separated by 192 nucleotides BPHYT_RS05625 and BPHYT_RS05630 are separated by 225 nucleotides
BPHYT_RS05615: BPHYT_RS05615 - hypothetical protein, at 1,287,655 to 1,287,981
_RS05615
BPHYT_RS05620: BPHYT_RS05620 - CsbD family protein, at 1,288,158 to 1,288,349
_RS05620
BPHYT_RS05625: BPHYT_RS05625 - hypothetical protein, at 1,288,542 to 1,288,763
_RS05625
BPHYT_RS05630: BPHYT_RS05630 - glutathione S-transferase, at 1,288,989 to 1,289,696
_RS05630
Position (kb) 1288
1289 Strain fitness (log2 ratio) -2
-1
0
1 at 1287.607 kb on - strand at 1287.831 kb on - strand, within BPHYT_RS05615 at 1287.886 kb on + strand, within BPHYT_RS05615 at 1287.886 kb on + strand, within BPHYT_RS05615 at 1288.144 kb on + strand at 1288.296 kb on + strand, within BPHYT_RS05620 at 1288.419 kb on + strand at 1288.447 kb on + strand at 1288.508 kb on + strand at 1288.582 kb on - strand, within BPHYT_RS05625 at 1288.722 kb on + strand, within BPHYT_RS05625 at 1288.725 kb on - strand, within BPHYT_RS05625 at 1288.725 kb on - strand, within BPHYT_RS05625 at 1288.761 kb on + strand at 1288.762 kb on - strand at 1288.819 kb on + strand at 1288.820 kb on - strand at 1288.883 kb on + strand at 1288.979 kb on - strand at 1289.274 kb on + strand, within BPHYT_RS05630 at 1289.274 kb on + strand, within BPHYT_RS05630 at 1289.326 kb on - strand, within BPHYT_RS05630 at 1289.419 kb on - strand, within BPHYT_RS05630 at 1289.446 kb on - strand, within BPHYT_RS05630 at 1289.477 kb on - strand, within BPHYT_RS05630 at 1289.477 kb on - strand, within BPHYT_RS05630 at 1289.562 kb on - strand, within BPHYT_RS05630 at 1289.676 kb on - strand at 1289.682 kb on - strand at 1289.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,287,607 - +1.1 1,287,831 - BPHYT_RS05615 0.54 -0.6 1,287,886 + BPHYT_RS05615 0.71 +1.2 1,287,886 + BPHYT_RS05615 0.71 +0.2 1,288,144 + -0.4 1,288,296 + BPHYT_RS05620 0.72 +1.1 1,288,419 + -0.6 1,288,447 + +0.2 1,288,508 + +0.4 1,288,582 - BPHYT_RS05625 0.18 -1.9 1,288,722 + BPHYT_RS05625 0.81 +0.2 1,288,725 - BPHYT_RS05625 0.82 +0.1 1,288,725 - BPHYT_RS05625 0.82 -0.8 1,288,761 + -0.4 1,288,762 - -0.8 1,288,819 + +0.6 1,288,820 - +0.6 1,288,883 + -0.6 1,288,979 - +0.0 1,289,274 + BPHYT_RS05630 0.40 +1.4 1,289,274 + BPHYT_RS05630 0.40 +0.3 1,289,326 - BPHYT_RS05630 0.48 +0.4 1,289,419 - BPHYT_RS05630 0.61 +0.3 1,289,446 - BPHYT_RS05630 0.65 -0.9 1,289,477 - BPHYT_RS05630 0.69 +0.8 1,289,477 - BPHYT_RS05630 0.69 -2.6 1,289,562 - BPHYT_RS05630 0.81 -0.7 1,289,676 - -0.6 1,289,682 - -1.1 1,289,682 - +1.0
Or see this region's nucleotide sequence