Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05140 and BPHYT_RS05145 are separated by 124 nucleotides BPHYT_RS05145 and BPHYT_RS05150 are separated by 401 nucleotides
BPHYT_RS05140: BPHYT_RS05140 - manganese transporter, at 1,185,329 to 1,186,654
_RS05140
BPHYT_RS05145: BPHYT_RS05145 - hypothetical protein, at 1,186,779 to 1,187,759
_RS05145
BPHYT_RS05150: BPHYT_RS05150 - methionine aminopeptidase, at 1,188,161 to 1,188,946
_RS05150
Position (kb) 1186
1187
1188 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1186.099 kb on - strand, within BPHYT_RS05140 at 1186.103 kb on + strand, within BPHYT_RS05140 at 1186.183 kb on - strand, within BPHYT_RS05140 at 1186.350 kb on - strand, within BPHYT_RS05140 at 1186.451 kb on - strand, within BPHYT_RS05140 at 1186.453 kb on - strand, within BPHYT_RS05140 at 1186.879 kb on + strand, within BPHYT_RS05145 at 1186.879 kb on + strand, within BPHYT_RS05145 at 1186.879 kb on + strand, within BPHYT_RS05145 at 1186.880 kb on - strand, within BPHYT_RS05145 at 1187.050 kb on + strand, within BPHYT_RS05145 at 1187.154 kb on - strand, within BPHYT_RS05145 at 1187.156 kb on - strand, within BPHYT_RS05145 at 1187.185 kb on + strand, within BPHYT_RS05145 at 1187.185 kb on + strand, within BPHYT_RS05145 at 1187.507 kb on - strand, within BPHYT_RS05145 at 1187.511 kb on - strand, within BPHYT_RS05145 at 1187.530 kb on + strand, within BPHYT_RS05145 at 1188.169 kb on + strand at 1188.169 kb on + strand at 1188.170 kb on - strand at 1188.173 kb on + strand at 1188.174 kb on - strand at 1188.303 kb on - strand, within BPHYT_RS05150 at 1188.304 kb on + strand, within BPHYT_RS05150 at 1188.304 kb on + strand, within BPHYT_RS05150 at 1188.304 kb on + strand, within BPHYT_RS05150 at 1188.305 kb on - strand, within BPHYT_RS05150 at 1188.305 kb on - strand, within BPHYT_RS05150 at 1188.305 kb on - strand, within BPHYT_RS05150 at 1188.497 kb on + strand, within BPHYT_RS05150 at 1188.498 kb on - strand, within BPHYT_RS05150 at 1188.548 kb on + strand, within BPHYT_RS05150 at 1188.549 kb on - strand, within BPHYT_RS05150 at 1188.549 kb on - strand, within BPHYT_RS05150 at 1188.549 kb on - strand, within BPHYT_RS05150 at 1188.549 kb on - strand at 1188.690 kb on - strand, within BPHYT_RS05150 at 1188.716 kb on + strand, within BPHYT_RS05150
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,186,099 - BPHYT_RS05140 0.58 -0.1 1,186,103 + BPHYT_RS05140 0.58 -0.1 1,186,183 - BPHYT_RS05140 0.64 +1.4 1,186,350 - BPHYT_RS05140 0.77 -1.1 1,186,451 - BPHYT_RS05140 0.85 +0.9 1,186,453 - BPHYT_RS05140 0.85 +0.1 1,186,879 + BPHYT_RS05145 0.10 +0.2 1,186,879 + BPHYT_RS05145 0.10 +0.3 1,186,879 + BPHYT_RS05145 0.10 -0.9 1,186,880 - BPHYT_RS05145 0.10 -0.8 1,187,050 + BPHYT_RS05145 0.28 +0.1 1,187,154 - BPHYT_RS05145 0.38 +0.6 1,187,156 - BPHYT_RS05145 0.38 +3.8 1,187,185 + BPHYT_RS05145 0.41 -1.9 1,187,185 + BPHYT_RS05145 0.41 +1.3 1,187,507 - BPHYT_RS05145 0.74 -0.1 1,187,511 - BPHYT_RS05145 0.75 +0.5 1,187,530 + BPHYT_RS05145 0.77 +3.4 1,188,169 + -0.7 1,188,169 + +0.3 1,188,170 - +0.3 1,188,173 + -0.6 1,188,174 - +0.0 1,188,303 - BPHYT_RS05150 0.18 -0.4 1,188,304 + BPHYT_RS05150 0.18 +0.1 1,188,304 + BPHYT_RS05150 0.18 +0.9 1,188,304 + BPHYT_RS05150 0.18 -0.4 1,188,305 - BPHYT_RS05150 0.18 -1.1 1,188,305 - BPHYT_RS05150 0.18 +0.2 1,188,305 - BPHYT_RS05150 0.18 +0.4 1,188,497 + BPHYT_RS05150 0.43 +0.6 1,188,498 - BPHYT_RS05150 0.43 +0.6 1,188,548 + BPHYT_RS05150 0.49 +0.3 1,188,549 - BPHYT_RS05150 0.49 -0.8 1,188,549 - BPHYT_RS05150 0.49 +0.7 1,188,549 - BPHYT_RS05150 0.49 +0.4 1,188,549 - +1.0 1,188,690 - BPHYT_RS05150 0.67 +0.0 1,188,716 + BPHYT_RS05150 0.71 +1.8
Or see this region's nucleotide sequence