Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04535 and BPHYT_RS04540 are separated by 166 nucleotides BPHYT_RS04540 and BPHYT_RS04545 are separated by 28 nucleotides
BPHYT_RS04535: BPHYT_RS04535 - hypothetical protein, at 1,046,459 to 1,048,156
_RS04535
BPHYT_RS04540: BPHYT_RS04540 - type VI secretion protein VasK, at 1,048,323 to 1,052,312
_RS04540
BPHYT_RS04545: BPHYT_RS04545 - membrane protein, at 1,052,341 to 1,053,585
_RS04545
Position (kb) 1048
1049
1050
1051
1052
1053 Strain fitness (log2 ratio) -1
0
1 at 1047.486 kb on + strand, within BPHYT_RS04535 at 1047.618 kb on + strand, within BPHYT_RS04535 at 1047.619 kb on - strand, within BPHYT_RS04535 at 1047.622 kb on + strand, within BPHYT_RS04535 at 1047.622 kb on + strand, within BPHYT_RS04535 at 1047.623 kb on - strand, within BPHYT_RS04535 at 1047.727 kb on + strand, within BPHYT_RS04535 at 1047.727 kb on + strand, within BPHYT_RS04535 at 1047.727 kb on + strand, within BPHYT_RS04535 at 1047.891 kb on - strand, within BPHYT_RS04535 at 1048.194 kb on - strand at 1048.194 kb on - strand at 1048.233 kb on - strand at 1048.267 kb on + strand at 1048.699 kb on + strand at 1048.895 kb on - strand, within BPHYT_RS04540 at 1049.032 kb on + strand, within BPHYT_RS04540 at 1049.269 kb on + strand at 1049.269 kb on + strand, within BPHYT_RS04540 at 1049.270 kb on - strand, within BPHYT_RS04540 at 1050.089 kb on + strand, within BPHYT_RS04540 at 1050.090 kb on - strand, within BPHYT_RS04540 at 1050.227 kb on - strand, within BPHYT_RS04540 at 1050.239 kb on - strand, within BPHYT_RS04540 at 1051.015 kb on + strand, within BPHYT_RS04540 at 1051.771 kb on + strand, within BPHYT_RS04540 at 1051.771 kb on + strand, within BPHYT_RS04540 at 1051.966 kb on + strand at 1052.335 kb on + strand at 1052.915 kb on + strand, within BPHYT_RS04545 at 1053.005 kb on + strand, within BPHYT_RS04545 at 1053.006 kb on - strand, within BPHYT_RS04545 at 1053.093 kb on - strand, within BPHYT_RS04545 at 1053.156 kb on - strand, within BPHYT_RS04545 at 1053.288 kb on - strand, within BPHYT_RS04545
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,047,486 + BPHYT_RS04535 0.60 -0.4 1,047,618 + BPHYT_RS04535 0.68 +0.4 1,047,619 - BPHYT_RS04535 0.68 +0.4 1,047,622 + BPHYT_RS04535 0.68 +1.7 1,047,622 + BPHYT_RS04535 0.68 +1.2 1,047,623 - BPHYT_RS04535 0.69 -0.7 1,047,727 + BPHYT_RS04535 0.75 +0.6 1,047,727 + BPHYT_RS04535 0.75 +0.4 1,047,727 + BPHYT_RS04535 0.75 +0.4 1,047,891 - BPHYT_RS04535 0.84 -0.2 1,048,194 - -0.7 1,048,194 - -0.0 1,048,233 - -0.1 1,048,267 + +0.1 1,048,699 + +1.3 1,048,895 - BPHYT_RS04540 0.14 -0.6 1,049,032 + BPHYT_RS04540 0.18 +1.0 1,049,269 + -1.2 1,049,269 + BPHYT_RS04540 0.24 -0.7 1,049,270 - BPHYT_RS04540 0.24 +0.3 1,050,089 + BPHYT_RS04540 0.44 +0.7 1,050,090 - BPHYT_RS04540 0.44 -0.4 1,050,227 - BPHYT_RS04540 0.48 +0.9 1,050,239 - BPHYT_RS04540 0.48 -0.9 1,051,015 + BPHYT_RS04540 0.67 +0.2 1,051,771 + BPHYT_RS04540 0.86 +0.0 1,051,771 + BPHYT_RS04540 0.86 -0.3 1,051,966 + +0.1 1,052,335 + -0.0 1,052,915 + BPHYT_RS04545 0.46 -1.0 1,053,005 + BPHYT_RS04545 0.53 +0.1 1,053,006 - BPHYT_RS04545 0.53 -0.7 1,053,093 - BPHYT_RS04545 0.60 -0.4 1,053,156 - BPHYT_RS04545 0.65 -0.4 1,053,288 - BPHYT_RS04545 0.76 -1.2
Or see this region's nucleotide sequence