Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04510 and BPHYT_RS04515 are separated by 58 nucleotides BPHYT_RS04515 and BPHYT_RS04520 are separated by 15 nucleotides BPHYT_RS04520 and BPHYT_RS04525 are separated by 175 nucleotides BPHYT_RS04525 and BPHYT_RS04530 are separated by 251 nucleotides
BPHYT_RS04510: BPHYT_RS04510 - urease subunit alpha, at 1,041,700 to 1,043,406
_RS04510
BPHYT_RS04515: BPHYT_RS04515 - urease subunit beta, at 1,043,465 to 1,043,770
_RS04515
BPHYT_RS04520: BPHYT_RS04520 - urease subunit gamma, at 1,043,786 to 1,044,088
_RS04520
BPHYT_RS04525: BPHYT_RS04525 - amino acid ABC transporter substrate-binding protein, at 1,044,264 to 1,045,067
_RS04525
BPHYT_RS04530: BPHYT_RS04530 - acyltransferase, at 1,045,319 to 1,046,404
_RS04530
Position (kb) 1044
1045
1046 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1044.155 kb on + strand at 1044.682 kb on + strand, within BPHYT_RS04525 at 1044.683 kb on - strand, within BPHYT_RS04525 at 1044.685 kb on + strand, within BPHYT_RS04525 at 1044.969 kb on - strand, within BPHYT_RS04525 at 1045.147 kb on + strand at 1045.452 kb on + strand, within BPHYT_RS04530 at 1045.452 kb on + strand, within BPHYT_RS04530 at 1045.452 kb on + strand, within BPHYT_RS04530 at 1045.452 kb on + strand, within BPHYT_RS04530 at 1045.453 kb on - strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.605 kb on - strand, within BPHYT_RS04530 at 1045.605 kb on - strand, within BPHYT_RS04530 at 1045.693 kb on - strand, within BPHYT_RS04530 at 1045.770 kb on + strand, within BPHYT_RS04530
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 1,044,155 + +1.4 1,044,682 + BPHYT_RS04525 0.52 -0.3 1,044,683 - BPHYT_RS04525 0.52 -0.6 1,044,685 + BPHYT_RS04525 0.52 -0.6 1,044,969 - BPHYT_RS04525 0.88 -0.4 1,045,147 + -0.2 1,045,452 + BPHYT_RS04530 0.12 -0.2 1,045,452 + BPHYT_RS04530 0.12 -0.2 1,045,452 + BPHYT_RS04530 0.12 +0.0 1,045,452 + BPHYT_RS04530 0.12 -0.1 1,045,453 - BPHYT_RS04530 0.12 -0.6 1,045,575 + BPHYT_RS04530 0.24 -2.7 1,045,575 + BPHYT_RS04530 0.24 +0.1 1,045,575 + BPHYT_RS04530 0.24 -1.0 1,045,576 - BPHYT_RS04530 0.24 -2.2 1,045,576 - BPHYT_RS04530 0.24 -0.5 1,045,576 - BPHYT_RS04530 0.24 +3.5 1,045,605 - BPHYT_RS04530 0.26 +0.1 1,045,605 - BPHYT_RS04530 0.26 -0.3 1,045,693 - BPHYT_RS04530 0.34 -0.4 1,045,770 + BPHYT_RS04530 0.42 -0.4
Or see this region's nucleotide sequence