Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03555 and BPHYT_RS03560 are separated by 289 nucleotides BPHYT_RS03560 and BPHYT_RS03565 are separated by 71 nucleotides
BPHYT_RS03555: BPHYT_RS03555 - glutamine-synthetase adenylyltransferase, at 804,500 to 807,292
_RS03555
BPHYT_RS03560: BPHYT_RS03560 - DNA repair protein, at 807,582 to 809,252
_RS03560
BPHYT_RS03565: BPHYT_RS03565 - NAD kinase, at 809,324 to 810,226
_RS03565
Position (kb) 807
808
809
810 Strain fitness (log2 ratio) -1
0
1 at 806.589 kb on - strand, within BPHYT_RS03555 at 806.589 kb on - strand, within BPHYT_RS03555 at 806.589 kb on - strand, within BPHYT_RS03555 at 806.589 kb on - strand, within BPHYT_RS03555 at 806.621 kb on + strand, within BPHYT_RS03555 at 806.630 kb on + strand, within BPHYT_RS03555 at 806.630 kb on + strand, within BPHYT_RS03555 at 806.630 kb on + strand, within BPHYT_RS03555 at 806.631 kb on - strand, within BPHYT_RS03555 at 806.788 kb on + strand, within BPHYT_RS03555 at 807.035 kb on + strand at 807.100 kb on - strand at 807.165 kb on - strand at 807.173 kb on + strand at 807.178 kb on + strand at 807.178 kb on + strand at 807.244 kb on + strand at 807.244 kb on + strand at 807.583 kb on + strand at 807.584 kb on - strand at 807.584 kb on - strand at 808.382 kb on - strand, within BPHYT_RS03560 at 808.382 kb on - strand, within BPHYT_RS03560 at 808.397 kb on - strand, within BPHYT_RS03560 at 808.919 kb on + strand, within BPHYT_RS03560 at 808.947 kb on + strand, within BPHYT_RS03560 at 808.948 kb on - strand, within BPHYT_RS03560 at 808.948 kb on - strand, within BPHYT_RS03560 at 810.236 kb on - strand at 810.236 kb on - strand at 810.242 kb on + strand at 810.242 kb on + strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.243 kb on - strand at 810.246 kb on + strand at 810.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 806,589 - BPHYT_RS03555 0.75 -1.7 806,589 - BPHYT_RS03555 0.75 -0.1 806,589 - BPHYT_RS03555 0.75 -0.4 806,589 - BPHYT_RS03555 0.75 -0.7 806,621 + BPHYT_RS03555 0.76 -1.3 806,630 + BPHYT_RS03555 0.76 -1.0 806,630 + BPHYT_RS03555 0.76 +1.5 806,630 + BPHYT_RS03555 0.76 +0.1 806,631 - BPHYT_RS03555 0.76 +0.3 806,788 + BPHYT_RS03555 0.82 -0.3 807,035 + -0.3 807,100 - -0.5 807,165 - -0.4 807,173 + -0.1 807,178 + +0.7 807,178 + -0.5 807,244 + -0.2 807,244 + -1.5 807,583 + +1.0 807,584 - +0.8 807,584 - +0.5 808,382 - BPHYT_RS03560 0.48 +0.5 808,382 - BPHYT_RS03560 0.48 +0.4 808,397 - BPHYT_RS03560 0.49 +0.3 808,919 + BPHYT_RS03560 0.80 -0.5 808,947 + BPHYT_RS03560 0.82 -0.1 808,948 - BPHYT_RS03560 0.82 -0.0 808,948 - BPHYT_RS03560 0.82 +1.5 810,236 - +0.8 810,236 - +0.5 810,242 + -1.4 810,242 + -0.5 810,243 - +0.0 810,243 - +1.3 810,243 - +0.6 810,243 - +0.8 810,243 - +0.8 810,243 - +0.2 810,246 + -1.0 810,247 - +0.9
Or see this region's nucleotide sequence