Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03385 and BPHYT_RS03390 are separated by 70 nucleotides BPHYT_RS03390 and BPHYT_RS03395 are separated by 218 nucleotides BPHYT_RS03395 and BPHYT_RS03400 are separated by 783 nucleotides
BPHYT_RS03385: BPHYT_RS03385 - DeoR family transcriptional regulator, at 761,732 to 762,472
_RS03385
BPHYT_RS03390: BPHYT_RS03390 - glyoxalase, at 762,543 to 762,926
_RS03390
BPHYT_RS03395: BPHYT_RS03395 - DNA methyltransferase, at 763,145 to 764,446
_RS03395
BPHYT_RS03400: BPHYT_RS03400 - ATP-dependent DNA helicase RecG, at 765,230 to 767,680
_RS03400
Position (kb) 763
764
765 Strain fitness (log2 ratio) -1
0
1 at 762.306 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.432 kb on + strand at 762.433 kb on - strand at 762.462 kb on + strand at 762.463 kb on - strand at 762.607 kb on + strand, within BPHYT_RS03390 at 762.785 kb on - strand, within BPHYT_RS03390 at 762.854 kb on - strand, within BPHYT_RS03390 at 762.999 kb on - strand at 763.333 kb on + strand, within BPHYT_RS03395 at 763.334 kb on - strand, within BPHYT_RS03395 at 763.494 kb on + strand, within BPHYT_RS03395 at 763.669 kb on + strand, within BPHYT_RS03395 at 763.731 kb on + strand, within BPHYT_RS03395 at 763.840 kb on - strand, within BPHYT_RS03395 at 764.202 kb on + strand, within BPHYT_RS03395 at 764.202 kb on + strand, within BPHYT_RS03395 at 764.203 kb on - strand, within BPHYT_RS03395 at 764.203 kb on - strand, within BPHYT_RS03395 at 764.271 kb on + strand, within BPHYT_RS03395 at 764.778 kb on + strand at 764.864 kb on - strand at 764.922 kb on - strand at 764.974 kb on - strand at 764.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 762,306 + BPHYT_RS03385 0.77 +0.5 762,325 + BPHYT_RS03385 0.80 -0.5 762,325 + BPHYT_RS03385 0.80 -0.6 762,432 + +0.3 762,433 - +0.2 762,462 + -0.8 762,463 - +0.9 762,607 + BPHYT_RS03390 0.17 -0.0 762,785 - BPHYT_RS03390 0.63 -0.7 762,854 - BPHYT_RS03390 0.81 +0.5 762,999 - +0.0 763,333 + BPHYT_RS03395 0.14 +0.2 763,334 - BPHYT_RS03395 0.15 +0.5 763,494 + BPHYT_RS03395 0.27 -0.9 763,669 + BPHYT_RS03395 0.40 -0.3 763,731 + BPHYT_RS03395 0.45 +0.2 763,840 - BPHYT_RS03395 0.53 +0.3 764,202 + BPHYT_RS03395 0.81 -0.7 764,202 + BPHYT_RS03395 0.81 +0.5 764,203 - BPHYT_RS03395 0.81 -1.2 764,203 - BPHYT_RS03395 0.81 -0.8 764,271 + BPHYT_RS03395 0.86 -0.5 764,778 + -0.2 764,864 - +0.7 764,922 - +0.1 764,974 - +0.0 764,974 - +0.2
Or see this region's nucleotide sequence