Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03380 and BPHYT_RS03385 are separated by 114 nucleotides BPHYT_RS03385 and BPHYT_RS03390 are separated by 70 nucleotides BPHYT_RS03390 and BPHYT_RS03395 are separated by 218 nucleotides
BPHYT_RS03380: BPHYT_RS03380 - NAD(P) transhydrogenase subunit beta, at 760,163 to 761,617
_RS03380
BPHYT_RS03385: BPHYT_RS03385 - DeoR family transcriptional regulator, at 761,732 to 762,472
_RS03385
BPHYT_RS03390: BPHYT_RS03390 - glyoxalase, at 762,543 to 762,926
_RS03390
BPHYT_RS03395: BPHYT_RS03395 - DNA methyltransferase, at 763,145 to 764,446
_RS03395
Position (kb) 761
762
763 Strain fitness (log2 ratio) -1
0
1
2 at 760.890 kb on - strand, within BPHYT_RS03380 at 760.989 kb on - strand, within BPHYT_RS03380 at 761.168 kb on + strand, within BPHYT_RS03380 at 761.249 kb on + strand, within BPHYT_RS03380 at 761.250 kb on - strand, within BPHYT_RS03380 at 761.250 kb on - strand, within BPHYT_RS03380 at 761.321 kb on + strand at 761.347 kb on + strand, within BPHYT_RS03380 at 761.468 kb on + strand, within BPHYT_RS03380 at 761.469 kb on - strand, within BPHYT_RS03380 at 761.543 kb on + strand at 761.544 kb on - strand at 761.596 kb on + strand at 761.597 kb on - strand at 761.616 kb on - strand at 761.722 kb on + strand at 761.734 kb on - strand at 762.306 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.325 kb on + strand, within BPHYT_RS03385 at 762.432 kb on + strand at 762.433 kb on - strand at 762.462 kb on + strand at 762.463 kb on - strand at 762.607 kb on + strand, within BPHYT_RS03390 at 762.785 kb on - strand, within BPHYT_RS03390 at 762.854 kb on - strand, within BPHYT_RS03390 at 762.999 kb on - strand at 763.333 kb on + strand, within BPHYT_RS03395 at 763.334 kb on - strand, within BPHYT_RS03395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 760,890 - BPHYT_RS03380 0.50 +0.8 760,989 - BPHYT_RS03380 0.57 -0.0 761,168 + BPHYT_RS03380 0.69 +2.5 761,249 + BPHYT_RS03380 0.75 +0.1 761,250 - BPHYT_RS03380 0.75 -0.1 761,250 - BPHYT_RS03380 0.75 -1.5 761,321 + +1.1 761,347 + BPHYT_RS03380 0.81 -0.3 761,468 + BPHYT_RS03380 0.90 +0.1 761,469 - BPHYT_RS03380 0.90 -0.6 761,543 + +0.5 761,544 - -0.5 761,596 + +0.6 761,597 - +0.5 761,616 - -1.0 761,722 + +0.5 761,734 - +0.4 762,306 + BPHYT_RS03385 0.77 +0.5 762,325 + BPHYT_RS03385 0.80 -0.5 762,325 + BPHYT_RS03385 0.80 -0.6 762,432 + +0.3 762,433 - +0.2 762,462 + -0.8 762,463 - +0.9 762,607 + BPHYT_RS03390 0.17 -0.0 762,785 - BPHYT_RS03390 0.63 -0.7 762,854 - BPHYT_RS03390 0.81 +0.5 762,999 - +0.0 763,333 + BPHYT_RS03395 0.14 +0.2 763,334 - BPHYT_RS03395 0.15 +0.5
Or see this region's nucleotide sequence