Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02725 and BPHYT_RS02730 are separated by 101 nucleotides BPHYT_RS02730 and BPHYT_RS02735 overlap by 8 nucleotides
BPHYT_RS02725: BPHYT_RS02725 - GntR family transcriptional regulator, at 610,643 to 611,377
_RS02725
BPHYT_RS02730: BPHYT_RS02730 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 611,479 to 612,582
_RS02730
BPHYT_RS02735: BPHYT_RS02735 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) <small>(from data)</small>, at 612,575 to 613,582
_RS02735
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 610.588 kb on + strand at 610.615 kb on - strand at 610.697 kb on + strand at 610.698 kb on - strand at 611.153 kb on + strand, within BPHYT_RS02725 at 611.154 kb on - strand, within BPHYT_RS02725 at 611.159 kb on + strand, within BPHYT_RS02725 at 611.159 kb on + strand, within BPHYT_RS02725 at 611.326 kb on + strand at 611.326 kb on + strand at 611.327 kb on - strand at 611.327 kb on - strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.330 kb on + strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.331 kb on - strand at 611.349 kb on - strand at 611.495 kb on + strand at 611.599 kb on + strand, within BPHYT_RS02730 at 611.600 kb on - strand, within BPHYT_RS02730 at 611.845 kb on + strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.917 kb on + strand, within BPHYT_RS02730 at 611.918 kb on - strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.245 kb on + strand, within BPHYT_RS02730 at 612.246 kb on - strand, within BPHYT_RS02730 at 612.426 kb on - strand, within BPHYT_RS02730 at 612.426 kb on - strand, within BPHYT_RS02730 at 612.458 kb on - strand, within BPHYT_RS02730 at 612.458 kb on - strand, within BPHYT_RS02730 at 612.574 kb on + strand at 612.574 kb on + strand at 612.575 kb on - strand at 612.581 kb on - strand at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.016 kb on - strand at 613.016 kb on - strand, within BPHYT_RS02735 at 613.112 kb on - strand, within BPHYT_RS02735 at 613.432 kb on + strand, within BPHYT_RS02735 at 613.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 610,588 + -0.8 610,615 - +0.5 610,697 + +1.3 610,698 - -0.2 611,153 + BPHYT_RS02725 0.69 -0.8 611,154 - BPHYT_RS02725 0.70 -1.8 611,159 + BPHYT_RS02725 0.70 -1.3 611,159 + BPHYT_RS02725 0.70 -0.1 611,326 + +0.3 611,326 + -1.5 611,327 - +0.5 611,327 - -0.0 611,330 + +0.9 611,330 + -0.7 611,330 + -1.1 611,331 - +2.5 611,331 - -0.8 611,331 - -0.8 611,331 - -0.5 611,349 - -0.3 611,495 + -0.2 611,599 + BPHYT_RS02730 0.11 -0.4 611,600 - BPHYT_RS02730 0.11 +1.0 611,845 + BPHYT_RS02730 0.33 -1.0 611,846 - BPHYT_RS02730 0.33 -1.4 611,846 - BPHYT_RS02730 0.33 -2.8 611,917 + BPHYT_RS02730 0.40 -1.3 611,918 - BPHYT_RS02730 0.40 -0.6 612,040 + BPHYT_RS02730 0.51 -0.8 612,040 + BPHYT_RS02730 0.51 +0.5 612,040 + BPHYT_RS02730 0.51 -1.1 612,040 + BPHYT_RS02730 0.51 -2.7 612,241 + BPHYT_RS02730 0.69 +0.1 612,241 + BPHYT_RS02730 0.69 -1.4 612,242 - BPHYT_RS02730 0.69 -1.8 612,242 - BPHYT_RS02730 0.69 -0.2 612,242 - BPHYT_RS02730 0.69 -2.0 612,245 + BPHYT_RS02730 0.69 -0.4 612,246 - BPHYT_RS02730 0.69 -0.6 612,426 - BPHYT_RS02730 0.86 -0.2 612,426 - BPHYT_RS02730 0.86 -2.0 612,458 - BPHYT_RS02730 0.89 -1.1 612,458 - BPHYT_RS02730 0.89 -1.4 612,574 + +1.0 612,574 + +2.3 612,575 - -0.5 612,581 - -0.1 613,013 + BPHYT_RS02735 0.43 +0.4 613,013 + BPHYT_RS02735 0.43 +0.3 613,013 + BPHYT_RS02735 0.43 -0.3 613,014 - BPHYT_RS02735 0.44 -0.1 613,014 - BPHYT_RS02735 0.44 +0.8 613,014 - BPHYT_RS02735 0.44 +0.5 613,014 - BPHYT_RS02735 0.44 -0.5 613,014 - BPHYT_RS02735 0.44 -0.0 613,014 - BPHYT_RS02735 0.44 +2.8 613,016 - +0.5 613,016 - BPHYT_RS02735 0.44 +1.1 613,112 - BPHYT_RS02735 0.53 -0.5 613,432 + BPHYT_RS02735 0.85 +0.3 613,497 - -3.0
Or see this region's nucleotide sequence