Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02510 and BPHYT_RS02515 are separated by 55 nucleotides BPHYT_RS02515 and BPHYT_RS02520 are separated by 20 nucleotides
BPHYT_RS02510: BPHYT_RS02510 - C4-dicarboxylate ABC transporter, at 569,117 to 570,397
_RS02510
BPHYT_RS02515: BPHYT_RS02515 - ATPase, at 570,453 to 572,453
_RS02515
BPHYT_RS02520: BPHYT_RS02520 - Fis family transcriptional regulator, at 572,474 to 573,823
_RS02520
Position (kb) 570
571
572
573 Strain fitness (log2 ratio) -2
-1
0
1
2 at 569.474 kb on + strand, within BPHYT_RS02510 at 569.474 kb on + strand, within BPHYT_RS02510 at 569.747 kb on + strand, within BPHYT_RS02510 at 569.747 kb on + strand, within BPHYT_RS02510 at 569.748 kb on - strand, within BPHYT_RS02510 at 569.879 kb on + strand, within BPHYT_RS02510 at 569.879 kb on + strand, within BPHYT_RS02510 at 569.879 kb on + strand, within BPHYT_RS02510 at 569.880 kb on - strand, within BPHYT_RS02510 at 569.884 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.421 kb on + strand at 570.426 kb on + strand at 570.427 kb on - strand at 570.525 kb on + strand at 570.526 kb on - strand at 570.633 kb on + strand at 570.633 kb on + strand at 570.634 kb on - strand at 570.634 kb on - strand at 570.634 kb on - strand at 570.747 kb on + strand, within BPHYT_RS02515 at 570.747 kb on + strand, within BPHYT_RS02515 at 570.747 kb on + strand, within BPHYT_RS02515 at 570.748 kb on - strand, within BPHYT_RS02515 at 570.748 kb on - strand, within BPHYT_RS02515 at 570.825 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.868 kb on - strand, within BPHYT_RS02515 at 570.868 kb on - strand, within BPHYT_RS02515 at 570.868 kb on - strand, within BPHYT_RS02515 at 570.942 kb on + strand, within BPHYT_RS02515 at 570.958 kb on - strand, within BPHYT_RS02515 at 571.029 kb on + strand, within BPHYT_RS02515 at 571.029 kb on + strand, within BPHYT_RS02515 at 571.032 kb on + strand, within BPHYT_RS02515 at 571.033 kb on - strand, within BPHYT_RS02515 at 571.188 kb on + strand, within BPHYT_RS02515 at 571.188 kb on + strand, within BPHYT_RS02515 at 571.189 kb on - strand, within BPHYT_RS02515 at 571.350 kb on + strand, within BPHYT_RS02515 at 571.465 kb on - strand, within BPHYT_RS02515 at 571.465 kb on - strand, within BPHYT_RS02515 at 571.492 kb on - strand, within BPHYT_RS02515 at 571.697 kb on + strand, within BPHYT_RS02515 at 571.963 kb on + strand, within BPHYT_RS02515 at 572.381 kb on - strand at 572.381 kb on - strand at 572.381 kb on - strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.498 kb on + strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.499 kb on - strand at 572.500 kb on + strand at 572.734 kb on + strand, within BPHYT_RS02520 at 572.734 kb on + strand, within BPHYT_RS02520 at 573.143 kb on - strand, within BPHYT_RS02520 at 573.246 kb on + strand, within BPHYT_RS02520 at 573.341 kb on - strand, within BPHYT_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 569,474 + BPHYT_RS02510 0.28 -2.0 569,474 + BPHYT_RS02510 0.28 -0.6 569,747 + BPHYT_RS02510 0.49 -0.4 569,747 + BPHYT_RS02510 0.49 -0.2 569,748 - BPHYT_RS02510 0.49 -0.8 569,879 + BPHYT_RS02510 0.59 -2.3 569,879 + BPHYT_RS02510 0.59 -0.5 569,879 + BPHYT_RS02510 0.59 -0.8 569,880 - BPHYT_RS02510 0.60 -1.5 569,884 + BPHYT_RS02510 0.60 -0.0 570,038 + BPHYT_RS02510 0.72 -1.2 570,038 + BPHYT_RS02510 0.72 -0.6 570,038 + BPHYT_RS02510 0.72 -0.6 570,038 + BPHYT_RS02510 0.72 -2.1 570,038 + BPHYT_RS02510 0.72 -0.2 570,039 - BPHYT_RS02510 0.72 -0.4 570,039 - BPHYT_RS02510 0.72 -0.5 570,039 - BPHYT_RS02510 0.72 -0.6 570,039 - BPHYT_RS02510 0.72 +0.1 570,421 + -0.6 570,426 + +0.5 570,427 - -1.6 570,525 + -0.5 570,526 - +0.2 570,633 + -0.3 570,633 + -1.0 570,634 - -0.7 570,634 - +0.1 570,634 - -0.1 570,747 + BPHYT_RS02515 0.15 -2.0 570,747 + BPHYT_RS02515 0.15 -0.9 570,747 + BPHYT_RS02515 0.15 -0.2 570,748 - BPHYT_RS02515 0.15 +0.5 570,748 - BPHYT_RS02515 0.15 +1.8 570,825 + BPHYT_RS02515 0.19 -0.6 570,867 + BPHYT_RS02515 0.21 -0.1 570,867 + BPHYT_RS02515 0.21 -0.8 570,867 + BPHYT_RS02515 0.21 +0.7 570,867 + BPHYT_RS02515 0.21 -0.6 570,867 + BPHYT_RS02515 0.21 -1.8 570,868 - BPHYT_RS02515 0.21 +0.2 570,868 - BPHYT_RS02515 0.21 -0.7 570,868 - BPHYT_RS02515 0.21 -0.4 570,942 + BPHYT_RS02515 0.24 -1.5 570,958 - BPHYT_RS02515 0.25 -0.6 571,029 + BPHYT_RS02515 0.29 +0.5 571,029 + BPHYT_RS02515 0.29 -0.2 571,032 + BPHYT_RS02515 0.29 +2.1 571,033 - BPHYT_RS02515 0.29 +0.0 571,188 + BPHYT_RS02515 0.37 -0.4 571,188 + BPHYT_RS02515 0.37 -0.0 571,189 - BPHYT_RS02515 0.37 -1.2 571,350 + BPHYT_RS02515 0.45 -1.0 571,465 - BPHYT_RS02515 0.51 +0.5 571,465 - BPHYT_RS02515 0.51 -1.0 571,492 - BPHYT_RS02515 0.52 -0.7 571,697 + BPHYT_RS02515 0.62 +0.1 571,963 + BPHYT_RS02515 0.75 +0.5 572,381 - +0.3 572,381 - -0.1 572,381 - -0.2 572,498 + -1.1 572,498 + -0.2 572,498 + -1.0 572,498 + -0.5 572,498 + -0.0 572,498 + -0.4 572,499 - -0.5 572,499 - -0.3 572,499 - +0.3 572,499 - -0.4 572,499 - -0.0 572,500 + +0.1 572,734 + BPHYT_RS02520 0.19 -0.4 572,734 + BPHYT_RS02520 0.19 +0.2 573,143 - BPHYT_RS02520 0.50 -0.5 573,246 + BPHYT_RS02520 0.57 -1.1 573,341 - BPHYT_RS02520 0.64 -0.3
Or see this region's nucleotide sequence