Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02505 and BPHYT_RS02510 are separated by 404 nucleotides BPHYT_RS02510 and BPHYT_RS02515 are separated by 55 nucleotides
BPHYT_RS02505: BPHYT_RS02505 - spermidine/putrescine ABC transporter ATPase, at 567,642 to 568,712
_RS02505
BPHYT_RS02510: BPHYT_RS02510 - C4-dicarboxylate ABC transporter, at 569,117 to 570,397
_RS02510
BPHYT_RS02515: BPHYT_RS02515 - ATPase, at 570,453 to 572,453
_RS02515
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1
2 at 568.148 kb on + strand, within BPHYT_RS02505 at 568.149 kb on - strand, within BPHYT_RS02505 at 568.306 kb on - strand, within BPHYT_RS02505 at 568.612 kb on + strand at 568.710 kb on + strand at 568.936 kb on + strand at 568.936 kb on + strand at 568.961 kb on + strand at 568.962 kb on - strand at 568.962 kb on - strand at 568.962 kb on - strand at 568.962 kb on - strand at 569.030 kb on - strand at 569.055 kb on - strand at 569.128 kb on + strand at 569.134 kb on + strand at 569.144 kb on + strand at 569.145 kb on - strand at 569.196 kb on - strand at 569.354 kb on + strand, within BPHYT_RS02510 at 569.354 kb on + strand, within BPHYT_RS02510 at 569.354 kb on + strand, within BPHYT_RS02510 at 569.354 kb on + strand, within BPHYT_RS02510 at 569.474 kb on + strand, within BPHYT_RS02510 at 569.474 kb on + strand, within BPHYT_RS02510 at 569.747 kb on + strand, within BPHYT_RS02510 at 569.747 kb on + strand, within BPHYT_RS02510 at 569.748 kb on - strand, within BPHYT_RS02510 at 569.879 kb on + strand, within BPHYT_RS02510 at 569.879 kb on + strand, within BPHYT_RS02510 at 569.879 kb on + strand, within BPHYT_RS02510 at 569.880 kb on - strand, within BPHYT_RS02510 at 569.884 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.038 kb on + strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.039 kb on - strand, within BPHYT_RS02510 at 570.421 kb on + strand at 570.426 kb on + strand at 570.427 kb on - strand at 570.525 kb on + strand at 570.526 kb on - strand at 570.633 kb on + strand at 570.633 kb on + strand at 570.634 kb on - strand at 570.634 kb on - strand at 570.634 kb on - strand at 570.747 kb on + strand, within BPHYT_RS02515 at 570.747 kb on + strand, within BPHYT_RS02515 at 570.747 kb on + strand, within BPHYT_RS02515 at 570.748 kb on - strand, within BPHYT_RS02515 at 570.748 kb on - strand, within BPHYT_RS02515 at 570.825 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.867 kb on + strand, within BPHYT_RS02515 at 570.868 kb on - strand, within BPHYT_RS02515 at 570.868 kb on - strand, within BPHYT_RS02515 at 570.868 kb on - strand, within BPHYT_RS02515 at 570.942 kb on + strand, within BPHYT_RS02515 at 570.958 kb on - strand, within BPHYT_RS02515 at 571.029 kb on + strand, within BPHYT_RS02515 at 571.029 kb on + strand, within BPHYT_RS02515 at 571.032 kb on + strand, within BPHYT_RS02515 at 571.033 kb on - strand, within BPHYT_RS02515 at 571.188 kb on + strand, within BPHYT_RS02515 at 571.188 kb on + strand, within BPHYT_RS02515 at 571.189 kb on - strand, within BPHYT_RS02515 at 571.350 kb on + strand, within BPHYT_RS02515
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 568,148 + BPHYT_RS02505 0.47 +1.1 568,149 - BPHYT_RS02505 0.47 -0.2 568,306 - BPHYT_RS02505 0.62 -0.9 568,612 + +1.1 568,710 + +1.7 568,936 + +0.7 568,936 + +0.5 568,961 + -0.0 568,962 - -0.4 568,962 - -0.1 568,962 - +0.1 568,962 - -0.4 569,030 - +0.8 569,055 - -0.6 569,128 + -0.4 569,134 + -0.0 569,144 + -0.1 569,145 - +1.1 569,196 - -0.5 569,354 + BPHYT_RS02510 0.19 +0.6 569,354 + BPHYT_RS02510 0.19 -1.7 569,354 + BPHYT_RS02510 0.19 +1.8 569,354 + BPHYT_RS02510 0.19 +0.5 569,474 + BPHYT_RS02510 0.28 -2.0 569,474 + BPHYT_RS02510 0.28 -0.6 569,747 + BPHYT_RS02510 0.49 -0.4 569,747 + BPHYT_RS02510 0.49 -0.2 569,748 - BPHYT_RS02510 0.49 -0.8 569,879 + BPHYT_RS02510 0.59 -2.3 569,879 + BPHYT_RS02510 0.59 -0.5 569,879 + BPHYT_RS02510 0.59 -0.8 569,880 - BPHYT_RS02510 0.60 -1.5 569,884 + BPHYT_RS02510 0.60 -0.0 570,038 + BPHYT_RS02510 0.72 -1.2 570,038 + BPHYT_RS02510 0.72 -0.6 570,038 + BPHYT_RS02510 0.72 -0.6 570,038 + BPHYT_RS02510 0.72 -2.1 570,038 + BPHYT_RS02510 0.72 -0.2 570,039 - BPHYT_RS02510 0.72 -0.4 570,039 - BPHYT_RS02510 0.72 -0.5 570,039 - BPHYT_RS02510 0.72 -0.6 570,039 - BPHYT_RS02510 0.72 +0.1 570,421 + -0.6 570,426 + +0.5 570,427 - -1.6 570,525 + -0.5 570,526 - +0.2 570,633 + -0.3 570,633 + -1.0 570,634 - -0.7 570,634 - +0.1 570,634 - -0.1 570,747 + BPHYT_RS02515 0.15 -2.0 570,747 + BPHYT_RS02515 0.15 -0.9 570,747 + BPHYT_RS02515 0.15 -0.2 570,748 - BPHYT_RS02515 0.15 +0.5 570,748 - BPHYT_RS02515 0.15 +1.8 570,825 + BPHYT_RS02515 0.19 -0.6 570,867 + BPHYT_RS02515 0.21 -0.1 570,867 + BPHYT_RS02515 0.21 -0.8 570,867 + BPHYT_RS02515 0.21 +0.7 570,867 + BPHYT_RS02515 0.21 -0.6 570,867 + BPHYT_RS02515 0.21 -1.8 570,868 - BPHYT_RS02515 0.21 +0.2 570,868 - BPHYT_RS02515 0.21 -0.7 570,868 - BPHYT_RS02515 0.21 -0.4 570,942 + BPHYT_RS02515 0.24 -1.5 570,958 - BPHYT_RS02515 0.25 -0.6 571,029 + BPHYT_RS02515 0.29 +0.5 571,029 + BPHYT_RS02515 0.29 -0.2 571,032 + BPHYT_RS02515 0.29 +2.1 571,033 - BPHYT_RS02515 0.29 +0.0 571,188 + BPHYT_RS02515 0.37 -0.4 571,188 + BPHYT_RS02515 0.37 -0.0 571,189 - BPHYT_RS02515 0.37 -1.2 571,350 + BPHYT_RS02515 0.45 -1.0
Or see this region's nucleotide sequence