Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01825 and BPHYT_RS01830 are separated by 113 nucleotides BPHYT_RS01830 and BPHYT_RS01835 are separated by 278 nucleotides
BPHYT_RS01825: BPHYT_RS01825 - sugar ABC transporter substrate-binding protein, at 414,729 to 415,748
_RS01825
BPHYT_RS01830: BPHYT_RS01830 - LacI family transcriptional regulator, at 415,862 to 416,914
_RS01830
BPHYT_RS01835: BPHYT_RS01835 - aldose epimerase, at 417,193 to 418,233
_RS01835
Position (kb) 415
416
417 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.294 kb on + strand, within BPHYT_RS01825 at 415.294 kb on + strand, within BPHYT_RS01825 at 415.295 kb on - strand, within BPHYT_RS01825 at 415.295 kb on - strand, within BPHYT_RS01825 at 415.416 kb on + strand, within BPHYT_RS01825 at 415.762 kb on - strand at 415.780 kb on - strand at 415.780 kb on - strand at 415.780 kb on - strand at 415.789 kb on + strand at 415.794 kb on + strand at 415.795 kb on - strand at 415.838 kb on + strand at 415.874 kb on - strand at 416.368 kb on + strand, within BPHYT_RS01830 at 416.368 kb on + strand, within BPHYT_RS01830 at 416.368 kb on + strand, within BPHYT_RS01830 at 416.369 kb on - strand, within BPHYT_RS01830 at 416.369 kb on - strand, within BPHYT_RS01830 at 416.369 kb on - strand, within BPHYT_RS01830 at 416.370 kb on + strand, within BPHYT_RS01830 at 416.370 kb on + strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.371 kb on - strand, within BPHYT_RS01830 at 416.471 kb on - strand at 416.472 kb on + strand, within BPHYT_RS01830 at 416.472 kb on + strand, within BPHYT_RS01830 at 416.472 kb on + strand, within BPHYT_RS01830 at 416.491 kb on + strand, within BPHYT_RS01830 at 416.492 kb on - strand, within BPHYT_RS01830 at 416.536 kb on - strand, within BPHYT_RS01830 at 416.628 kb on + strand, within BPHYT_RS01830 at 416.628 kb on + strand, within BPHYT_RS01830 at 416.656 kb on - strand, within BPHYT_RS01830 at 416.724 kb on + strand, within BPHYT_RS01830 at 416.724 kb on + strand, within BPHYT_RS01830 at 416.810 kb on + strand at 416.810 kb on + strand at 416.811 kb on - strand at 416.811 kb on - strand at 416.811 kb on - strand at 417.014 kb on + strand at 417.015 kb on - strand at 417.017 kb on + strand at 417.017 kb on + strand at 417.018 kb on - strand at 417.018 kb on - strand at 417.018 kb on - strand at 417.194 kb on + strand at 417.194 kb on + strand at 417.194 kb on + strand at 417.406 kb on + strand, within BPHYT_RS01835 at 417.512 kb on - strand, within BPHYT_RS01835 at 417.693 kb on - strand, within BPHYT_RS01835 at 417.823 kb on + strand, within BPHYT_RS01835 at 417.853 kb on + strand, within BPHYT_RS01835
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 415,294 + BPHYT_RS01825 0.55 +0.7 415,294 + BPHYT_RS01825 0.55 +0.5 415,295 - BPHYT_RS01825 0.55 -2.1 415,295 - BPHYT_RS01825 0.55 -1.1 415,416 + BPHYT_RS01825 0.67 -0.1 415,762 - +0.2 415,780 - +0.7 415,780 - -0.1 415,780 - -0.1 415,789 + -0.2 415,794 + +0.5 415,795 - +0.2 415,838 + -0.5 415,874 - -1.1 416,368 + BPHYT_RS01830 0.48 -0.1 416,368 + BPHYT_RS01830 0.48 -1.2 416,368 + BPHYT_RS01830 0.48 -1.5 416,369 - BPHYT_RS01830 0.48 -0.0 416,369 - BPHYT_RS01830 0.48 -2.1 416,369 - BPHYT_RS01830 0.48 -1.0 416,370 + BPHYT_RS01830 0.48 -0.7 416,370 + BPHYT_RS01830 0.48 -0.8 416,371 - BPHYT_RS01830 0.48 -1.2 416,371 - BPHYT_RS01830 0.48 -1.3 416,371 - BPHYT_RS01830 0.48 -1.7 416,371 - BPHYT_RS01830 0.48 -1.2 416,471 - +1.5 416,472 + BPHYT_RS01830 0.58 -0.7 416,472 + BPHYT_RS01830 0.58 -0.1 416,472 + BPHYT_RS01830 0.58 +2.2 416,491 + BPHYT_RS01830 0.60 -0.5 416,492 - BPHYT_RS01830 0.60 -1.0 416,536 - BPHYT_RS01830 0.64 -2.4 416,628 + BPHYT_RS01830 0.73 -1.7 416,628 + BPHYT_RS01830 0.73 -1.2 416,656 - BPHYT_RS01830 0.75 +0.7 416,724 + BPHYT_RS01830 0.82 -0.3 416,724 + BPHYT_RS01830 0.82 +0.4 416,810 + -1.2 416,810 + +0.5 416,811 - -1.3 416,811 - -0.7 416,811 - -1.8 417,014 + +0.5 417,015 - +0.7 417,017 + -1.1 417,017 + -0.8 417,018 - +0.5 417,018 - +0.8 417,018 - -0.5 417,194 + +0.2 417,194 + -0.7 417,194 + +0.1 417,406 + BPHYT_RS01835 0.20 -0.1 417,512 - BPHYT_RS01835 0.31 +0.1 417,693 - BPHYT_RS01835 0.48 -0.1 417,823 + BPHYT_RS01835 0.61 +0.5 417,853 + BPHYT_RS01835 0.63 -0.4
Or see this region's nucleotide sequence