Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01650 and BPHYT_RS01655 are separated by 94 nucleotides BPHYT_RS01655 and BPHYT_RS01660 are separated by 44 nucleotides BPHYT_RS01660 and BPHYT_RS01665 are separated by 57 nucleotides
BPHYT_RS01650: BPHYT_RS01650 - 23S rRNA methyltransferase, at 374,870 to 376,072
_RS01650
BPHYT_RS01655: BPHYT_RS01655 - tyrosine recombinase XerC, at 376,167 to 377,090
_RS01655
BPHYT_RS01660: BPHYT_RS01660 - hypothetical protein, at 377,135 to 377,857
_RS01660
BPHYT_RS01665: BPHYT_RS01665 - diaminopimelate epimerase, at 377,915 to 378,814
_RS01665
Position (kb) 376
377
378 Strain fitness (log2 ratio) -2
-1
0
1 at 375.373 kb on - strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.448 kb on - strand, within BPHYT_RS01650 at 375.723 kb on + strand, within BPHYT_RS01650 at 375.723 kb on + strand, within BPHYT_RS01650 at 375.723 kb on + strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.828 kb on - strand, within BPHYT_RS01650 at 375.913 kb on - strand, within BPHYT_RS01650 at 376.009 kb on - strand at 376.009 kb on - strand at 376.060 kb on + strand at 376.205 kb on - strand at 376.238 kb on + strand at 376.240 kb on + strand at 376.241 kb on - strand at 376.241 kb on - strand at 376.241 kb on - strand at 376.256 kb on + strand at 377.021 kb on + strand at 377.021 kb on + strand at 377.427 kb on + strand, within BPHYT_RS01660 at 377.833 kb on - strand at 377.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 375,373 - BPHYT_RS01650 0.42 +0.2 375,447 + BPHYT_RS01650 0.48 -0.1 375,447 + BPHYT_RS01650 0.48 -0.4 375,447 + BPHYT_RS01650 0.48 +1.5 375,447 + BPHYT_RS01650 0.48 +1.1 375,447 + BPHYT_RS01650 0.48 +0.4 375,448 - BPHYT_RS01650 0.48 +0.1 375,723 + BPHYT_RS01650 0.71 +0.2 375,723 + BPHYT_RS01650 0.71 -0.1 375,723 + BPHYT_RS01650 0.71 +1.1 375,724 - BPHYT_RS01650 0.71 +0.1 375,724 - BPHYT_RS01650 0.71 -1.0 375,724 - BPHYT_RS01650 0.71 +0.6 375,724 - BPHYT_RS01650 0.71 +0.5 375,724 - BPHYT_RS01650 0.71 -0.0 375,828 - BPHYT_RS01650 0.80 +0.5 375,913 - BPHYT_RS01650 0.87 -0.3 376,009 - +1.5 376,009 - +0.4 376,060 + -0.4 376,205 - -0.1 376,238 + +0.2 376,240 + -0.4 376,241 - -1.0 376,241 - +0.1 376,241 - -0.7 376,256 + +0.5 377,021 + -0.8 377,021 + -2.0 377,427 + BPHYT_RS01660 0.40 -2.0 377,833 - -0.8 377,917 - +1.1
Or see this region's nucleotide sequence