Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01645 and BPHYT_RS01650 are separated by 190 nucleotides BPHYT_RS01650 and BPHYT_RS01655 are separated by 94 nucleotides
BPHYT_RS01645: BPHYT_RS01645 - cobalamin biosynthesis protein CobW, at 373,591 to 374,679
_RS01645
BPHYT_RS01650: BPHYT_RS01650 - 23S rRNA methyltransferase, at 374,870 to 376,072
_RS01650
BPHYT_RS01655: BPHYT_RS01655 - tyrosine recombinase XerC, at 376,167 to 377,090
_RS01655
Position (kb) 374
375
376
377 Strain fitness (log2 ratio) -2
-1
0
1 at 373.981 kb on - strand, within BPHYT_RS01645 at 374.692 kb on + strand at 374.693 kb on - strand at 374.693 kb on - strand at 374.693 kb on - strand at 374.693 kb on - strand at 374.702 kb on + strand at 374.703 kb on - strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.780 kb on + strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.781 kb on - strand at 374.849 kb on + strand at 374.849 kb on + strand at 374.861 kb on + strand at 374.901 kb on + strand at 374.901 kb on + strand at 375.108 kb on + strand, within BPHYT_RS01650 at 375.109 kb on - strand, within BPHYT_RS01650 at 375.109 kb on - strand, within BPHYT_RS01650 at 375.109 kb on - strand, within BPHYT_RS01650 at 375.373 kb on - strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.447 kb on + strand, within BPHYT_RS01650 at 375.448 kb on - strand, within BPHYT_RS01650 at 375.723 kb on + strand, within BPHYT_RS01650 at 375.723 kb on + strand, within BPHYT_RS01650 at 375.723 kb on + strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.724 kb on - strand, within BPHYT_RS01650 at 375.828 kb on - strand, within BPHYT_RS01650 at 375.913 kb on - strand, within BPHYT_RS01650 at 376.009 kb on - strand at 376.009 kb on - strand at 376.060 kb on + strand at 376.205 kb on - strand at 376.238 kb on + strand at 376.240 kb on + strand at 376.241 kb on - strand at 376.241 kb on - strand at 376.241 kb on - strand at 376.256 kb on + strand at 377.021 kb on + strand at 377.021 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 373,981 - BPHYT_RS01645 0.36 +0.2 374,692 + +0.5 374,693 - +0.2 374,693 - +0.4 374,693 - +0.4 374,693 - +0.5 374,702 + -0.2 374,703 - -0.3 374,780 + -0.1 374,780 + +0.6 374,780 + +0.7 374,780 + -0.0 374,780 + +0.3 374,780 + +0.3 374,780 + -0.6 374,780 + -0.5 374,780 + -0.4 374,780 + -0.8 374,780 + +0.9 374,780 + -1.8 374,780 + +1.7 374,781 - +0.2 374,781 - +0.5 374,781 - +1.1 374,781 - -0.4 374,781 - -1.0 374,781 - -1.0 374,781 - -0.4 374,781 - +0.0 374,781 - -0.2 374,781 - -0.9 374,849 + +0.1 374,849 + -1.5 374,861 + +0.3 374,901 + +0.4 374,901 + -1.1 375,108 + BPHYT_RS01650 0.20 +0.1 375,109 - BPHYT_RS01650 0.20 +0.1 375,109 - BPHYT_RS01650 0.20 +0.1 375,109 - BPHYT_RS01650 0.20 +1.5 375,373 - BPHYT_RS01650 0.42 +0.2 375,447 + BPHYT_RS01650 0.48 -0.1 375,447 + BPHYT_RS01650 0.48 -0.4 375,447 + BPHYT_RS01650 0.48 +1.5 375,447 + BPHYT_RS01650 0.48 +1.1 375,447 + BPHYT_RS01650 0.48 +0.4 375,448 - BPHYT_RS01650 0.48 +0.1 375,723 + BPHYT_RS01650 0.71 +0.2 375,723 + BPHYT_RS01650 0.71 -0.1 375,723 + BPHYT_RS01650 0.71 +1.1 375,724 - BPHYT_RS01650 0.71 +0.1 375,724 - BPHYT_RS01650 0.71 -1.0 375,724 - BPHYT_RS01650 0.71 +0.6 375,724 - BPHYT_RS01650 0.71 +0.5 375,724 - BPHYT_RS01650 0.71 -0.0 375,828 - BPHYT_RS01650 0.80 +0.5 375,913 - BPHYT_RS01650 0.87 -0.3 376,009 - +1.5 376,009 - +0.4 376,060 + -0.4 376,205 - -0.1 376,238 + +0.2 376,240 + -0.4 376,241 - -1.0 376,241 - +0.1 376,241 - -0.7 376,256 + +0.5 377,021 + -0.8 377,021 + -2.0
Or see this region's nucleotide sequence