Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00355 and BPHYT_RS00360 are separated by 317 nucleotides
BPHYT_RS00355: BPHYT_RS00355 - porin, at 89,804 to 90,931
_RS00355
BPHYT_RS00360: BPHYT_RS00360 - protoporphyrinogen oxidase, at 91,249 to 92,604
_RS00360
Position (kb) 89
90
91 Strain fitness (log2 ratio) -2
-1
0
1 at 88.973 kb on - strand at 89.116 kb on + strand at 89.187 kb on - strand at 89.190 kb on + strand at 89.191 kb on - strand at 89.322 kb on - strand at 89.341 kb on - strand at 89.419 kb on - strand at 89.422 kb on + strand at 89.423 kb on - strand at 89.423 kb on - strand at 89.700 kb on - strand at 89.830 kb on - strand at 89.830 kb on - strand at 90.129 kb on - strand, within BPHYT_RS00355 at 90.457 kb on + strand, within BPHYT_RS00355 at 90.457 kb on + strand, within BPHYT_RS00355 at 90.458 kb on - strand, within BPHYT_RS00355 at 90.458 kb on - strand, within BPHYT_RS00355 at 90.512 kb on - strand, within BPHYT_RS00355 at 90.516 kb on - strand, within BPHYT_RS00355 at 90.516 kb on - strand, within BPHYT_RS00355 at 90.696 kb on - strand, within BPHYT_RS00355 at 90.797 kb on + strand at 90.840 kb on - strand at 90.923 kb on - strand at 91.319 kb on + strand at 91.320 kb on - strand at 91.320 kb on - strand at 91.545 kb on - strand, within BPHYT_RS00360 at 91.574 kb on + strand, within BPHYT_RS00360 at 91.739 kb on - strand, within BPHYT_RS00360 at 91.854 kb on + strand, within BPHYT_RS00360 at 91.874 kb on + strand, within BPHYT_RS00360 at 91.874 kb on + strand, within BPHYT_RS00360 at 91.875 kb on - strand, within BPHYT_RS00360
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 88,973 - +0.1 89,116 + -1.6 89,187 - -0.6 89,190 + +0.3 89,191 - -0.9 89,322 - -0.5 89,341 - -0.1 89,419 - +0.3 89,422 + +1.1 89,423 - +0.2 89,423 - -0.5 89,700 - -0.4 89,830 - -0.1 89,830 - -0.0 90,129 - BPHYT_RS00355 0.29 -2.1 90,457 + BPHYT_RS00355 0.58 +0.4 90,457 + BPHYT_RS00355 0.58 -0.2 90,458 - BPHYT_RS00355 0.58 -2.7 90,458 - BPHYT_RS00355 0.58 -0.6 90,512 - BPHYT_RS00355 0.63 -0.3 90,516 - BPHYT_RS00355 0.63 -0.5 90,516 - BPHYT_RS00355 0.63 -0.9 90,696 - BPHYT_RS00355 0.79 +0.7 90,797 + +1.5 90,840 - +0.5 90,923 - -0.5 91,319 + -0.3 91,320 - -0.1 91,320 - -0.2 91,545 - BPHYT_RS00360 0.22 -0.5 91,574 + BPHYT_RS00360 0.24 +0.5 91,739 - BPHYT_RS00360 0.36 -1.7 91,854 + BPHYT_RS00360 0.45 -1.1 91,874 + BPHYT_RS00360 0.46 -0.4 91,874 + BPHYT_RS00360 0.46 +0.5 91,875 - BPHYT_RS00360 0.46 +0.5
Or see this region's nucleotide sequence