Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00345 and BPHYT_RS00350 are separated by 312 nucleotides
BPHYT_RS00345: BPHYT_RS00345 - MFS transporter, at 85,933 to 87,156
_RS00345
BPHYT_RS00350: BPHYT_RS00350 - hypothetical protein, at 87,469 to 88,155
_RS00350
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1
2 at 86.527 kb on + strand, within BPHYT_RS00345 at 86.527 kb on + strand, within BPHYT_RS00345 at 86.672 kb on - strand, within BPHYT_RS00345 at 86.672 kb on - strand, within BPHYT_RS00345 at 86.698 kb on + strand, within BPHYT_RS00345 at 86.698 kb on + strand, within BPHYT_RS00345 at 86.728 kb on + strand, within BPHYT_RS00345 at 86.729 kb on - strand, within BPHYT_RS00345 at 86.912 kb on + strand, within BPHYT_RS00345 at 86.913 kb on - strand, within BPHYT_RS00345 at 86.916 kb on - strand, within BPHYT_RS00345 at 86.916 kb on - strand, within BPHYT_RS00345 at 86.941 kb on + strand, within BPHYT_RS00345 at 86.942 kb on - strand, within BPHYT_RS00345 at 87.022 kb on - strand, within BPHYT_RS00345 at 87.025 kb on + strand, within BPHYT_RS00345 at 87.032 kb on + strand, within BPHYT_RS00345 at 87.033 kb on - strand, within BPHYT_RS00345 at 87.118 kb on + strand at 87.119 kb on - strand at 87.210 kb on - strand at 87.484 kb on + strand at 87.485 kb on - strand at 87.549 kb on + strand, within BPHYT_RS00350 at 87.738 kb on - strand, within BPHYT_RS00350 at 87.910 kb on - strand, within BPHYT_RS00350 at 88.010 kb on + strand, within BPHYT_RS00350 at 88.204 kb on + strand at 88.255 kb on + strand at 88.730 kb on + strand at 88.734 kb on + strand at 88.746 kb on + strand at 88.746 kb on + strand at 88.747 kb on - strand at 88.973 kb on - strand at 89.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 86,527 + BPHYT_RS00345 0.49 -2.7 86,527 + BPHYT_RS00345 0.49 -0.5 86,672 - BPHYT_RS00345 0.60 +0.5 86,672 - BPHYT_RS00345 0.60 -0.1 86,698 + BPHYT_RS00345 0.62 -1.1 86,698 + BPHYT_RS00345 0.62 -0.1 86,728 + BPHYT_RS00345 0.65 +1.0 86,729 - BPHYT_RS00345 0.65 +0.1 86,912 + BPHYT_RS00345 0.80 -0.5 86,913 - BPHYT_RS00345 0.80 +0.1 86,916 - BPHYT_RS00345 0.80 +0.8 86,916 - BPHYT_RS00345 0.80 -0.5 86,941 + BPHYT_RS00345 0.82 -0.1 86,942 - BPHYT_RS00345 0.82 +0.6 87,022 - BPHYT_RS00345 0.89 -0.4 87,025 + BPHYT_RS00345 0.89 +1.0 87,032 + BPHYT_RS00345 0.90 +2.5 87,033 - BPHYT_RS00345 0.90 -1.3 87,118 + -0.5 87,119 - +0.0 87,210 - -0.0 87,484 + +0.8 87,485 - -0.5 87,549 + BPHYT_RS00350 0.12 -0.2 87,738 - BPHYT_RS00350 0.39 -1.1 87,910 - BPHYT_RS00350 0.64 -2.7 88,010 + BPHYT_RS00350 0.79 +0.8 88,204 + -0.4 88,255 + -0.9 88,730 + +0.8 88,734 + -0.3 88,746 + -0.4 88,746 + +1.5 88,747 - -0.6 88,973 - +0.1 89,116 + -1.6
Or see this region's nucleotide sequence