Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00335 and BPHYT_RS00340 are separated by 16 nucleotides BPHYT_RS00340 and BPHYT_RS00345 are separated by 223 nucleotides BPHYT_RS00345 and BPHYT_RS00350 are separated by 312 nucleotides
BPHYT_RS00335: BPHYT_RS00335 - peptidase M19, at 84,101 to 85,099
_RS00335
BPHYT_RS00340: BPHYT_RS00340 - hypothetical protein, at 85,116 to 85,709
_RS00340
BPHYT_RS00345: BPHYT_RS00345 - MFS transporter, at 85,933 to 87,156
_RS00345
BPHYT_RS00350: BPHYT_RS00350 - hypothetical protein, at 87,469 to 88,155
_RS00350
Position (kb) 85
86
87
88 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 84.956 kb on - strand, within BPHYT_RS00335 at 84.986 kb on - strand, within BPHYT_RS00335 at 85.134 kb on - strand at 85.134 kb on - strand at 85.230 kb on - strand, within BPHYT_RS00340 at 85.466 kb on - strand, within BPHYT_RS00340 at 85.603 kb on - strand, within BPHYT_RS00340 at 85.777 kb on + strand at 85.777 kb on + strand at 85.778 kb on - strand at 85.786 kb on - strand at 85.927 kb on - strand at 85.934 kb on + strand at 85.951 kb on - strand at 85.951 kb on - strand at 86.086 kb on + strand, within BPHYT_RS00345 at 86.087 kb on - strand, within BPHYT_RS00345 at 86.110 kb on - strand, within BPHYT_RS00345 at 86.238 kb on + strand, within BPHYT_RS00345 at 86.239 kb on - strand, within BPHYT_RS00345 at 86.246 kb on + strand, within BPHYT_RS00345 at 86.259 kb on + strand, within BPHYT_RS00345 at 86.260 kb on - strand, within BPHYT_RS00345 at 86.332 kb on + strand, within BPHYT_RS00345 at 86.383 kb on + strand, within BPHYT_RS00345 at 86.443 kb on + strand, within BPHYT_RS00345 at 86.527 kb on + strand, within BPHYT_RS00345 at 86.527 kb on + strand, within BPHYT_RS00345 at 86.672 kb on - strand, within BPHYT_RS00345 at 86.672 kb on - strand, within BPHYT_RS00345 at 86.698 kb on + strand, within BPHYT_RS00345 at 86.698 kb on + strand, within BPHYT_RS00345 at 86.728 kb on + strand, within BPHYT_RS00345 at 86.729 kb on - strand, within BPHYT_RS00345 at 86.912 kb on + strand, within BPHYT_RS00345 at 86.913 kb on - strand, within BPHYT_RS00345 at 86.916 kb on - strand, within BPHYT_RS00345 at 86.916 kb on - strand, within BPHYT_RS00345 at 86.941 kb on + strand, within BPHYT_RS00345 at 86.942 kb on - strand, within BPHYT_RS00345 at 87.022 kb on - strand, within BPHYT_RS00345 at 87.025 kb on + strand, within BPHYT_RS00345 at 87.032 kb on + strand, within BPHYT_RS00345 at 87.033 kb on - strand, within BPHYT_RS00345 at 87.118 kb on + strand at 87.119 kb on - strand at 87.210 kb on - strand at 87.484 kb on + strand at 87.485 kb on - strand at 87.549 kb on + strand, within BPHYT_RS00350 at 87.738 kb on - strand, within BPHYT_RS00350 at 87.910 kb on - strand, within BPHYT_RS00350 at 88.010 kb on + strand, within BPHYT_RS00350
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 84,956 - BPHYT_RS00335 0.86 -0.5 84,986 - BPHYT_RS00335 0.89 -1.5 85,134 - +0.3 85,134 - +0.7 85,230 - BPHYT_RS00340 0.19 -1.0 85,466 - BPHYT_RS00340 0.59 -0.7 85,603 - BPHYT_RS00340 0.82 -0.4 85,777 + +0.8 85,777 + +0.2 85,778 - -1.1 85,786 - +1.2 85,927 - -0.1 85,934 + +0.3 85,951 - -3.1 85,951 - +1.1 86,086 + BPHYT_RS00345 0.12 -0.5 86,087 - BPHYT_RS00345 0.13 -1.1 86,110 - BPHYT_RS00345 0.14 -0.6 86,238 + BPHYT_RS00345 0.25 +0.0 86,239 - BPHYT_RS00345 0.25 -0.1 86,246 + BPHYT_RS00345 0.26 -0.1 86,259 + BPHYT_RS00345 0.27 +0.5 86,260 - BPHYT_RS00345 0.27 -0.1 86,332 + BPHYT_RS00345 0.33 -0.3 86,383 + BPHYT_RS00345 0.37 -0.7 86,443 + BPHYT_RS00345 0.42 +1.5 86,527 + BPHYT_RS00345 0.49 -2.7 86,527 + BPHYT_RS00345 0.49 -0.5 86,672 - BPHYT_RS00345 0.60 +0.5 86,672 - BPHYT_RS00345 0.60 -0.1 86,698 + BPHYT_RS00345 0.62 -1.1 86,698 + BPHYT_RS00345 0.62 -0.1 86,728 + BPHYT_RS00345 0.65 +1.0 86,729 - BPHYT_RS00345 0.65 +0.1 86,912 + BPHYT_RS00345 0.80 -0.5 86,913 - BPHYT_RS00345 0.80 +0.1 86,916 - BPHYT_RS00345 0.80 +0.8 86,916 - BPHYT_RS00345 0.80 -0.5 86,941 + BPHYT_RS00345 0.82 -0.1 86,942 - BPHYT_RS00345 0.82 +0.6 87,022 - BPHYT_RS00345 0.89 -0.4 87,025 + BPHYT_RS00345 0.89 +1.0 87,032 + BPHYT_RS00345 0.90 +2.5 87,033 - BPHYT_RS00345 0.90 -1.3 87,118 + -0.5 87,119 - +0.0 87,210 - -0.0 87,484 + +0.8 87,485 - -0.5 87,549 + BPHYT_RS00350 0.12 -0.2 87,738 - BPHYT_RS00350 0.39 -1.1 87,910 - BPHYT_RS00350 0.64 -2.7 88,010 + BPHYT_RS00350 0.79 +0.8
Or see this region's nucleotide sequence