Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00290 and BPHYT_RS00295 are separated by 8 nucleotides BPHYT_RS00295 and BPHYT_RS00300 are separated by 118 nucleotides BPHYT_RS00300 and BPHYT_RS00305 are separated by 20 nucleotides
BPHYT_RS00290: BPHYT_RS00290 - hypothetical protein, at 73,237 to 74,064
_RS00290
BPHYT_RS00295: BPHYT_RS00295 - hypothetical protein, at 74,073 to 74,495
_RS00295
BPHYT_RS00300: BPHYT_RS00300 - urease accessory protein UreF, at 74,614 to 75,306
_RS00300
BPHYT_RS00305: BPHYT_RS00305 - ABC transporter substrate-binding protein, at 75,327 to 76,892
_RS00305
Position (kb) 74
75
76 Strain fitness (log2 ratio) -1
0
1
2 at 73.697 kb on - strand, within BPHYT_RS00290 at 73.819 kb on + strand, within BPHYT_RS00290 at 73.820 kb on - strand, within BPHYT_RS00290 at 73.820 kb on - strand, within BPHYT_RS00290 at 74.063 kb on - strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.072 kb on + strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.073 kb on - strand at 74.093 kb on - strand at 74.259 kb on + strand, within BPHYT_RS00295 at 74.259 kb on + strand, within BPHYT_RS00295 at 74.260 kb on - strand, within BPHYT_RS00295 at 74.260 kb on - strand, within BPHYT_RS00295 at 74.664 kb on - strand at 74.963 kb on + strand, within BPHYT_RS00300 at 74.974 kb on + strand, within BPHYT_RS00300 at 74.975 kb on - strand, within BPHYT_RS00300 at 75.344 kb on - strand at 75.421 kb on + strand at 75.422 kb on - strand at 75.422 kb on - strand at 75.422 kb on - strand at 75.425 kb on - strand at 75.624 kb on + strand, within BPHYT_RS00305 at 75.624 kb on + strand, within BPHYT_RS00305 at 75.654 kb on + strand, within BPHYT_RS00305 at 75.778 kb on - strand, within BPHYT_RS00305 at 75.778 kb on - strand, within BPHYT_RS00305 at 75.778 kb on - strand, within BPHYT_RS00305 at 75.779 kb on + strand, within BPHYT_RS00305 at 75.780 kb on - strand, within BPHYT_RS00305 at 75.780 kb on - strand, within BPHYT_RS00305 at 75.952 kb on - strand, within BPHYT_RS00305 at 76.126 kb on - strand, within BPHYT_RS00305 at 76.134 kb on + strand, within BPHYT_RS00305 at 76.135 kb on - strand, within BPHYT_RS00305
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days remove 73,697 - BPHYT_RS00290 0.56 -0.6 73,819 + BPHYT_RS00290 0.70 +0.7 73,820 - BPHYT_RS00290 0.70 +1.1 73,820 - BPHYT_RS00290 0.70 -0.1 74,063 - -0.3 74,072 + -0.1 74,072 + -0.4 74,072 + +0.7 74,072 + +0.3 74,072 + +0.5 74,073 - +0.3 74,073 - -0.1 74,073 - +0.5 74,073 - -0.6 74,093 - +0.5 74,259 + BPHYT_RS00295 0.44 +2.1 74,259 + BPHYT_RS00295 0.44 +0.9 74,260 - BPHYT_RS00295 0.44 -1.5 74,260 - BPHYT_RS00295 0.44 +0.5 74,664 - +0.1 74,963 + BPHYT_RS00300 0.50 +0.6 74,974 + BPHYT_RS00300 0.52 -1.5 74,975 - BPHYT_RS00300 0.52 +0.2 75,344 - +0.0 75,421 + -0.5 75,422 - -0.3 75,422 - +0.1 75,422 - +0.0 75,425 - -0.8 75,624 + BPHYT_RS00305 0.19 +0.7 75,624 + BPHYT_RS00305 0.19 +0.9 75,654 + BPHYT_RS00305 0.21 -0.7 75,778 - BPHYT_RS00305 0.29 -0.2 75,778 - BPHYT_RS00305 0.29 +0.6 75,778 - BPHYT_RS00305 0.29 +0.3 75,779 + BPHYT_RS00305 0.29 +0.8 75,780 - BPHYT_RS00305 0.29 -0.4 75,780 - BPHYT_RS00305 0.29 +0.0 75,952 - BPHYT_RS00305 0.40 +0.5 76,126 - BPHYT_RS00305 0.51 +0.6 76,134 + BPHYT_RS00305 0.52 -1.1 76,135 - BPHYT_RS00305 0.52 +0.3
Or see this region's nucleotide sequence