Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29130

Experiment: LB 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29125 and BPHYT_RS29130 overlap by 4 nucleotidesBPHYT_RS29130 and BPHYT_RS29135 are separated by 35 nucleotides BPHYT_RS29125: BPHYT_RS29125 - RND transporter, at 2,087,703 to 2,089,199 _RS29125 BPHYT_RS29130: BPHYT_RS29130 - RND transporter MFP subunit, at 2,089,196 to 2,090,419 _RS29130 BPHYT_RS29135: BPHYT_RS29135 - acriflavin resistance protein, at 2,090,455 to 2,093,703 _RS29135 Position (kb) 2089 2090 2091Strain fitness (log2 ratio) -1 0 1at 2088.820 kb on + strand, within BPHYT_RS29125at 2088.821 kb on - strand, within BPHYT_RS29125at 2089.118 kb on - strandat 2089.873 kb on - strand, within BPHYT_RS29130at 2090.082 kb on + strand, within BPHYT_RS29130

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 37C
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2,088,820 + BPHYT_RS29125 0.75 -0.5
2,088,821 - BPHYT_RS29125 0.75 +0.0
2,089,118 - -0.1
2,089,873 - BPHYT_RS29130 0.55 -0.3
2,090,082 + BPHYT_RS29130 0.72 +0.3

Or see this region's nucleotide sequence