Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS29115 and BPHYT_RS29120 overlap by 4 nucleotides BPHYT_RS29120 and BPHYT_RS29125 are separated by 99 nucleotides BPHYT_RS29125 and BPHYT_RS29130 overlap by 4 nucleotides
BPHYT_RS29115: BPHYT_RS29115 - histidine kinase, at 2,085,463 to 2,086,920
_RS29115
BPHYT_RS29120: BPHYT_RS29120 - transcriptional regulator, at 2,086,917 to 2,087,603
_RS29120
BPHYT_RS29125: BPHYT_RS29125 - RND transporter, at 2,087,703 to 2,089,199
_RS29125
BPHYT_RS29130: BPHYT_RS29130 - RND transporter MFP subunit, at 2,089,196 to 2,090,419
_RS29130
Position (kb) 2087
2088
2089
2090 Strain fitness (log2 ratio) -1
0
1 at 2086.954 kb on + strand at 2087.048 kb on + strand, within BPHYT_RS29120 at 2087.048 kb on + strand, within BPHYT_RS29120 at 2087.048 kb on + strand, within BPHYT_RS29120 at 2087.396 kb on + strand, within BPHYT_RS29120 at 2087.396 kb on + strand, within BPHYT_RS29120 at 2088.820 kb on + strand, within BPHYT_RS29125 at 2088.821 kb on - strand, within BPHYT_RS29125 at 2089.118 kb on - strand at 2089.873 kb on - strand, within BPHYT_RS29130 at 2090.082 kb on + strand, within BPHYT_RS29130
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 2,086,954 + +0.3 2,087,048 + BPHYT_RS29120 0.19 +0.3 2,087,048 + BPHYT_RS29120 0.19 +0.8 2,087,048 + BPHYT_RS29120 0.19 +0.1 2,087,396 + BPHYT_RS29120 0.70 +0.4 2,087,396 + BPHYT_RS29120 0.70 -0.4 2,088,820 + BPHYT_RS29125 0.75 -0.5 2,088,821 - BPHYT_RS29125 0.75 +0.0 2,089,118 - -0.1 2,089,873 - BPHYT_RS29130 0.55 -0.3 2,090,082 + BPHYT_RS29130 0.72 +0.3
Or see this region's nucleotide sequence