Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24665 and BPHYT_RS24670 overlap by 4 nucleotides BPHYT_RS24670 and BPHYT_RS24675 overlap by 4 nucleotides BPHYT_RS24675 and BPHYT_RS24680 are separated by 11 nucleotides BPHYT_RS24680 and BPHYT_RS24685 are separated by 242 nucleotides
BPHYT_RS24665: BPHYT_RS24665 - ABC transporter permease, at 1,103,491 to 1,104,378
_RS24665
BPHYT_RS24670: BPHYT_RS24670 - ABC transporter permease, at 1,104,375 to 1,105,334
_RS24670
BPHYT_RS24675: BPHYT_RS24675 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,105,331 to 1,106,425
_RS24675
BPHYT_RS24680: BPHYT_RS24680 - hypothetical protein, at 1,106,437 to 1,106,712
_RS24680
BPHYT_RS24685: BPHYT_RS24685 - LysR family transcriptional regulator, at 1,106,955 to 1,107,848
_RS24685
Position (kb) 1105
1106
1107 Strain fitness (log2 ratio) -1
0
1 at 1104.615 kb on + strand, within BPHYT_RS24670 at 1104.796 kb on + strand, within BPHYT_RS24670 at 1105.353 kb on + strand at 1105.635 kb on + strand, within BPHYT_RS24675 at 1105.636 kb on - strand, within BPHYT_RS24675 at 1105.636 kb on - strand, within BPHYT_RS24675 at 1105.696 kb on - strand, within BPHYT_RS24675 at 1105.932 kb on + strand, within BPHYT_RS24675 at 1105.968 kb on + strand, within BPHYT_RS24675 at 1105.969 kb on - strand, within BPHYT_RS24675 at 1105.969 kb on - strand, within BPHYT_RS24675 at 1106.249 kb on - strand, within BPHYT_RS24675 at 1106.490 kb on - strand, within BPHYT_RS24680 at 1106.529 kb on + strand, within BPHYT_RS24680 at 1106.529 kb on + strand, within BPHYT_RS24680 at 1106.530 kb on - strand, within BPHYT_RS24680 at 1106.582 kb on + strand, within BPHYT_RS24680 at 1106.816 kb on - strand at 1107.040 kb on + strand at 1107.093 kb on + strand, within BPHYT_RS24685 at 1107.094 kb on - strand, within BPHYT_RS24685 at 1107.384 kb on + strand, within BPHYT_RS24685 at 1107.385 kb on - strand, within BPHYT_RS24685
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 1,104,615 + BPHYT_RS24670 0.25 -0.5 1,104,796 + BPHYT_RS24670 0.44 +0.1 1,105,353 + -0.2 1,105,635 + BPHYT_RS24675 0.28 -0.7 1,105,636 - BPHYT_RS24675 0.28 +0.3 1,105,636 - BPHYT_RS24675 0.28 -0.5 1,105,696 - BPHYT_RS24675 0.33 +0.4 1,105,932 + BPHYT_RS24675 0.55 -0.1 1,105,968 + BPHYT_RS24675 0.58 -0.3 1,105,969 - BPHYT_RS24675 0.58 -0.4 1,105,969 - BPHYT_RS24675 0.58 -0.3 1,106,249 - BPHYT_RS24675 0.84 -0.3 1,106,490 - BPHYT_RS24680 0.19 +0.3 1,106,529 + BPHYT_RS24680 0.33 -0.3 1,106,529 + BPHYT_RS24680 0.33 +0.5 1,106,530 - BPHYT_RS24680 0.34 +0.1 1,106,582 + BPHYT_RS24680 0.53 -0.1 1,106,816 - +0.2 1,107,040 + -0.6 1,107,093 + BPHYT_RS24685 0.15 -0.8 1,107,094 - BPHYT_RS24685 0.16 +0.1 1,107,384 + BPHYT_RS24685 0.48 +0.6 1,107,385 - BPHYT_RS24685 0.48 +1.1
Or see this region's nucleotide sequence