Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21835 and BPHYT_RS21840 are separated by 848 nucleotides BPHYT_RS21840 and BPHYT_RS21845 are separated by 72 nucleotides BPHYT_RS21845 and BPHYT_RS21850 are separated by 232 nucleotides
BPHYT_RS21835: BPHYT_RS21835 - NADH:flavin oxidoreductase, at 452,360 to 453,457
_RS21835
BPHYT_RS21840: BPHYT_RS21840 - hypothetical protein, at 454,306 to 455,337
_RS21840
BPHYT_RS21845: BPHYT_RS21845 - hypothetical protein, at 455,410 to 455,940
_RS21845
BPHYT_RS21850: BPHYT_RS21850 - pyrimidine reductase, at 456,173 to 456,850
_RS21850
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 453.444 kb on - strand at 453.444 kb on - strand at 453.445 kb on + strand at 453.446 kb on - strand at 453.446 kb on - strand at 453.615 kb on + strand at 453.616 kb on - strand at 453.663 kb on - strand at 453.732 kb on + strand at 453.732 kb on + strand at 453.768 kb on - strand at 453.857 kb on - strand at 454.029 kb on + strand at 454.030 kb on - strand at 454.702 kb on + strand, within BPHYT_RS21840 at 454.703 kb on - strand, within BPHYT_RS21840 at 454.888 kb on + strand, within BPHYT_RS21840 at 455.336 kb on - strand at 455.489 kb on - strand, within BPHYT_RS21845 at 455.606 kb on - strand, within BPHYT_RS21845 at 455.690 kb on - strand, within BPHYT_RS21845 at 455.701 kb on + strand, within BPHYT_RS21845 at 455.702 kb on - strand, within BPHYT_RS21845 at 455.794 kb on + strand, within BPHYT_RS21845 at 455.842 kb on + strand, within BPHYT_RS21845 at 455.877 kb on + strand, within BPHYT_RS21845 at 456.182 kb on + strand at 456.183 kb on - strand at 456.184 kb on + strand at 456.184 kb on + strand at 456.184 kb on + strand at 456.185 kb on - strand at 456.185 kb on - strand at 456.264 kb on - strand, within BPHYT_RS21850 at 456.264 kb on - strand, within BPHYT_RS21850
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 453,444 - -0.2 453,444 - -0.1 453,445 + +0.3 453,446 - -0.1 453,446 - +0.7 453,615 + -0.2 453,616 - -0.3 453,663 - -0.3 453,732 + +0.3 453,732 + -0.1 453,768 - +0.1 453,857 - -0.2 454,029 + -0.2 454,030 - -0.1 454,702 + BPHYT_RS21840 0.38 -0.0 454,703 - BPHYT_RS21840 0.38 -2.5 454,888 + BPHYT_RS21840 0.56 -0.6 455,336 - +0.3 455,489 - BPHYT_RS21845 0.15 +0.1 455,606 - BPHYT_RS21845 0.37 -0.2 455,690 - BPHYT_RS21845 0.53 -0.1 455,701 + BPHYT_RS21845 0.55 +0.2 455,702 - BPHYT_RS21845 0.55 +0.3 455,794 + BPHYT_RS21845 0.72 -1.1 455,842 + BPHYT_RS21845 0.81 +1.1 455,877 + BPHYT_RS21845 0.88 -1.7 456,182 + +0.2 456,183 - -0.2 456,184 + +3.1 456,184 + -0.2 456,184 + +0.1 456,185 - +0.5 456,185 - -0.1 456,264 - BPHYT_RS21850 0.13 -0.1 456,264 - BPHYT_RS21850 0.13 +0.8
Or see this region's nucleotide sequence