Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06430 and BPHYT_RS06435 are separated by 258 nucleotides BPHYT_RS06435 and BPHYT_RS06440 overlap by 1 nucleotides BPHYT_RS06440 and BPHYT_RS06445 overlap by 4 nucleotides BPHYT_RS06445 and BPHYT_RS06450 are separated by 81 nucleotides
BPHYT_RS06430: BPHYT_RS06430 - quinone oxidoreductase, at 1,462,541 to 1,463,515
_RS06430
BPHYT_RS06435: BPHYT_RS06435 - hypothetical protein, at 1,463,774 to 1,463,884
_RS06435
BPHYT_RS06440: BPHYT_RS06440 - ATPase, at 1,463,884 to 1,463,976
_RS06440
BPHYT_RS06445: BPHYT_RS06445 - ATPase, at 1,463,973 to 1,465,778
_RS06445
BPHYT_RS06450: BPHYT_RS06450 - potassium-transporting ATPase subunit B, at 1,465,860 to 1,467,944
_RS06450
Position (kb) 1463
1464
1465
1466 Strain fitness (log2 ratio) -1
0
1 at 1463.111 kb on + strand, within BPHYT_RS06430 at 1463.178 kb on - strand, within BPHYT_RS06430 at 1463.178 kb on - strand, within BPHYT_RS06430 at 1463.343 kb on - strand, within BPHYT_RS06430 at 1463.590 kb on + strand at 1463.686 kb on + strand at 1463.732 kb on + strand at 1463.787 kb on - strand, within BPHYT_RS06435 at 1463.787 kb on - strand, within BPHYT_RS06435 at 1463.944 kb on + strand, within BPHYT_RS06440 at 1463.945 kb on - strand, within BPHYT_RS06440 at 1464.166 kb on - strand, within BPHYT_RS06445 at 1464.213 kb on + strand, within BPHYT_RS06445 at 1464.333 kb on + strand, within BPHYT_RS06445 at 1464.333 kb on + strand, within BPHYT_RS06445 at 1464.507 kb on + strand, within BPHYT_RS06445 at 1464.508 kb on - strand, within BPHYT_RS06445 at 1464.583 kb on - strand, within BPHYT_RS06445 at 1464.616 kb on - strand, within BPHYT_RS06445 at 1465.230 kb on + strand, within BPHYT_RS06445 at 1465.231 kb on - strand, within BPHYT_RS06445 at 1465.531 kb on - strand, within BPHYT_RS06445 at 1465.716 kb on + strand at 1465.716 kb on + strand at 1465.871 kb on + strand at 1465.872 kb on - strand at 1465.983 kb on + strand at 1465.983 kb on + strand at 1466.302 kb on + strand, within BPHYT_RS06450 at 1466.718 kb on - strand, within BPHYT_RS06450
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 1,463,111 + BPHYT_RS06430 0.58 -0.2 1,463,178 - BPHYT_RS06430 0.65 -0.1 1,463,178 - BPHYT_RS06430 0.65 -1.1 1,463,343 - BPHYT_RS06430 0.82 -0.4 1,463,590 + -0.7 1,463,686 + -1.5 1,463,732 + -0.1 1,463,787 - BPHYT_RS06435 0.12 +0.9 1,463,787 - BPHYT_RS06435 0.12 +1.5 1,463,944 + BPHYT_RS06440 0.65 -0.4 1,463,945 - BPHYT_RS06440 0.66 -0.5 1,464,166 - BPHYT_RS06445 0.11 -0.5 1,464,213 + BPHYT_RS06445 0.13 -1.3 1,464,333 + BPHYT_RS06445 0.20 +0.1 1,464,333 + BPHYT_RS06445 0.20 +0.5 1,464,507 + BPHYT_RS06445 0.30 +0.0 1,464,508 - BPHYT_RS06445 0.30 +1.0 1,464,583 - BPHYT_RS06445 0.34 +0.1 1,464,616 - BPHYT_RS06445 0.36 +1.0 1,465,230 + BPHYT_RS06445 0.70 -0.8 1,465,231 - BPHYT_RS06445 0.70 +0.0 1,465,531 - BPHYT_RS06445 0.86 +0.1 1,465,716 + -0.2 1,465,716 + +0.5 1,465,871 + -0.3 1,465,872 - -0.1 1,465,983 + -0.0 1,465,983 + -0.6 1,466,302 + BPHYT_RS06450 0.21 -0.6 1,466,718 - BPHYT_RS06450 0.41 -0.0
Or see this region's nucleotide sequence