Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02535 and BPHYT_RS02540 are separated by 121 nucleotides BPHYT_RS02540 and BPHYT_RS02545 are separated by 415 nucleotides BPHYT_RS02545 and BPHYT_RS02550 are separated by 44 nucleotides
BPHYT_RS02535: BPHYT_RS02535 - magnesium chelatase subunit ChlI, at 575,663 to 577,261
_RS02535
BPHYT_RS02540: BPHYT_RS02540 - hypothetical protein, at 577,383 to 577,637
_RS02540
BPHYT_RS02545: BPHYT_RS02545 - nitrogen regulatory protein P-II 1, at 578,053 to 578,391
_RS02545
BPHYT_RS02550: BPHYT_RS02550 - ammonia channel protein, at 578,436 to 579,944
_RS02550
Position (kb) 578
579 Strain fitness (log2 ratio) -2
-1
0
1 at 577.365 kb on + strand at 577.366 kb on - strand at 577.461 kb on - strand, within BPHYT_RS02540 at 577.614 kb on - strand at 577.725 kb on - strand at 577.791 kb on + strand at 577.791 kb on + strand at 577.792 kb on - strand at 577.792 kb on - strand at 577.792 kb on - strand at 577.792 kb on - strand at 577.805 kb on - strand at 577.805 kb on - strand at 578.018 kb on - strand at 578.038 kb on + strand at 578.039 kb on - strand at 578.189 kb on - strand, within BPHYT_RS02545 at 578.204 kb on - strand, within BPHYT_RS02545 at 578.204 kb on - strand, within BPHYT_RS02545 at 578.390 kb on - strand at 578.403 kb on - strand at 578.414 kb on + strand at 578.415 kb on - strand at 578.415 kb on - strand at 578.446 kb on + strand at 578.811 kb on + strand, within BPHYT_RS02550 at 578.812 kb on - strand, within BPHYT_RS02550 at 578.907 kb on + strand, within BPHYT_RS02550 at 578.907 kb on + strand, within BPHYT_RS02550 at 578.908 kb on - strand at 578.979 kb on + strand, within BPHYT_RS02550 at 578.979 kb on + strand, within BPHYT_RS02550 at 578.979 kb on + strand, within BPHYT_RS02550 at 578.979 kb on + strand, within BPHYT_RS02550 at 578.980 kb on - strand, within BPHYT_RS02550 at 579.049 kb on - strand, within BPHYT_RS02550 at 579.058 kb on - strand, within BPHYT_RS02550 at 579.117 kb on - strand, within BPHYT_RS02550 at 579.117 kb on - strand, within BPHYT_RS02550 at 579.117 kb on - strand, within BPHYT_RS02550 at 579.139 kb on + strand, within BPHYT_RS02550 at 579.353 kb on + strand, within BPHYT_RS02550 at 579.353 kb on + strand, within BPHYT_RS02550 at 579.354 kb on - strand, within BPHYT_RS02550
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 577,365 + -0.4 577,366 - -0.7 577,461 - BPHYT_RS02540 0.31 +0.4 577,614 - -0.5 577,725 - -0.1 577,791 + +0.3 577,791 + -0.0 577,792 - +1.4 577,792 - -0.7 577,792 - -0.6 577,792 - -0.3 577,805 - -0.9 577,805 - -0.1 578,018 - -0.2 578,038 + -0.5 578,039 - -0.3 578,189 - BPHYT_RS02545 0.40 -0.3 578,204 - BPHYT_RS02545 0.45 +0.4 578,204 - BPHYT_RS02545 0.45 -0.6 578,390 - +0.1 578,403 - -0.2 578,414 + -2.1 578,415 - +0.4 578,415 - +0.1 578,446 + -0.1 578,811 + BPHYT_RS02550 0.25 +0.3 578,812 - BPHYT_RS02550 0.25 -0.8 578,907 + BPHYT_RS02550 0.31 -0.4 578,907 + BPHYT_RS02550 0.31 +0.8 578,908 - -0.3 578,979 + BPHYT_RS02550 0.36 +0.3 578,979 + BPHYT_RS02550 0.36 +0.1 578,979 + BPHYT_RS02550 0.36 -0.2 578,979 + BPHYT_RS02550 0.36 -0.7 578,980 - BPHYT_RS02550 0.36 -0.0 579,049 - BPHYT_RS02550 0.41 -0.5 579,058 - BPHYT_RS02550 0.41 -0.3 579,117 - BPHYT_RS02550 0.45 -0.4 579,117 - BPHYT_RS02550 0.45 +0.0 579,117 - BPHYT_RS02550 0.45 +0.0 579,139 + BPHYT_RS02550 0.47 +0.1 579,353 + BPHYT_RS02550 0.61 +0.2 579,353 + BPHYT_RS02550 0.61 +0.0 579,354 - BPHYT_RS02550 0.61 -0.0
Or see this region's nucleotide sequence