Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00365 and BPHYT_RS00370 are separated by 26 nucleotides BPHYT_RS00370 and BPHYT_RS00375 overlap by 4 nucleotides BPHYT_RS00375 and BPHYT_RS00380 are separated by 134 nucleotides BPHYT_RS00380 and BPHYT_RS00385 overlap by 4 nucleotides
BPHYT_RS00365: BPHYT_RS00365 - ABC transporter substrate-binding protein, at 92,781 to 93,749
_RS00365
BPHYT_RS00370: BPHYT_RS00370 - ABC transporter ATP-binding protein, at 93,776 to 94,582
_RS00370
BPHYT_RS00375: BPHYT_RS00375 - sugar ABC transporter, at 94,579 to 95,499
_RS00375
BPHYT_RS00380: BPHYT_RS00380 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 95,634 to 96,227
_RS00380
BPHYT_RS00385: BPHYT_RS00385 - decarboxylase, at 96,224 to 97,567
_RS00385
Position (kb) 94
95
96 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9 at 93.660 kb on + strand at 93.661 kb on - strand at 93.910 kb on - strand, within BPHYT_RS00370 at 93.968 kb on - strand, within BPHYT_RS00370 at 93.968 kb on - strand, within BPHYT_RS00370 at 94.009 kb on + strand, within BPHYT_RS00370 at 94.041 kb on - strand, within BPHYT_RS00370 at 94.442 kb on + strand, within BPHYT_RS00370 at 94.681 kb on - strand, within BPHYT_RS00375 at 94.874 kb on + strand, within BPHYT_RS00375 at 95.133 kb on + strand, within BPHYT_RS00375 at 95.221 kb on - strand, within BPHYT_RS00375 at 95.397 kb on + strand, within BPHYT_RS00375 at 95.398 kb on - strand, within BPHYT_RS00375 at 95.405 kb on + strand, within BPHYT_RS00375 at 95.406 kb on - strand, within BPHYT_RS00375 at 95.504 kb on - strand at 95.704 kb on - strand, within BPHYT_RS00380 at 95.965 kb on - strand, within BPHYT_RS00380 at 95.965 kb on - strand, within BPHYT_RS00380 at 96.164 kb on - strand, within BPHYT_RS00380 at 96.382 kb on - strand, within BPHYT_RS00385 at 96.382 kb on - strand, within BPHYT_RS00385 at 96.419 kb on - strand, within BPHYT_RS00385 at 96.468 kb on + strand, within BPHYT_RS00385 at 96.468 kb on + strand, within BPHYT_RS00385 at 96.468 kb on + strand, within BPHYT_RS00385 at 96.469 kb on - strand, within BPHYT_RS00385 at 96.469 kb on - strand, within BPHYT_RS00385
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 93,660 + +0.8 93,661 - +0.7 93,910 - BPHYT_RS00370 0.17 +1.2 93,968 - BPHYT_RS00370 0.24 -0.4 93,968 - BPHYT_RS00370 0.24 -0.2 94,009 + BPHYT_RS00370 0.29 -0.4 94,041 - BPHYT_RS00370 0.33 +0.6 94,442 + BPHYT_RS00370 0.83 -0.4 94,681 - BPHYT_RS00375 0.11 +0.2 94,874 + BPHYT_RS00375 0.32 +0.8 95,133 + BPHYT_RS00375 0.60 -0.1 95,221 - BPHYT_RS00375 0.70 +0.2 95,397 + BPHYT_RS00375 0.89 +0.2 95,398 - BPHYT_RS00375 0.89 -0.4 95,405 + BPHYT_RS00375 0.90 +1.0 95,406 - BPHYT_RS00375 0.90 -0.6 95,504 - +0.4 95,704 - BPHYT_RS00380 0.12 +9.7 95,965 - BPHYT_RS00380 0.56 -0.9 95,965 - BPHYT_RS00380 0.56 +0.3 96,164 - BPHYT_RS00380 0.89 +0.2 96,382 - BPHYT_RS00385 0.12 +0.4 96,382 - BPHYT_RS00385 0.12 +0.6 96,419 - BPHYT_RS00385 0.15 -1.4 96,468 + BPHYT_RS00385 0.18 -1.0 96,468 + BPHYT_RS00385 0.18 -0.4 96,468 + BPHYT_RS00385 0.18 -0.4 96,469 - BPHYT_RS00385 0.18 -0.2 96,469 - BPHYT_RS00385 0.18 -0.1
Or see this region's nucleotide sequence