Experiment: LB 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00325 and BPHYT_RS00330 are separated by 971 nucleotides
BPHYT_RS00325: BPHYT_RS00325 - hypothetical protein, at 82,302 to 82,532
_RS00325
BPHYT_RS00330: BPHYT_RS00330 - 4-vinyl reductase 4VR, at 83,504 to 84,052
_RS00330
Position (kb)
82
83 Strain fitness (log2 ratio)
-1
0
1 at 81.387 kb on - strand at 81.444 kb on + strand at 81.448 kb on + strand at 81.568 kb on + strand at 81.569 kb on - strand at 81.653 kb on + strand at 81.682 kb on - strand at 81.833 kb on + strand at 81.912 kb on - strand at 81.912 kb on - strand at 81.980 kb on + strand at 81.981 kb on - strand at 82.023 kb on + strand at 82.023 kb on + strand at 82.112 kb on + strand at 82.112 kb on + strand at 82.388 kb on - strand, within BPHYT_RS00325 at 82.503 kb on + strand, within BPHYT_RS00325 at 82.547 kb on + strand at 82.548 kb on - strand at 82.795 kb on + strand at 82.796 kb on - strand at 82.854 kb on + strand at 82.855 kb on - strand at 82.932 kb on + strand at 83.283 kb on + strand at 83.283 kb on + strand at 83.283 kb on + strand at 83.283 kb on + strand at 83.386 kb on + strand at 83.386 kb on + strand at 83.427 kb on + strand at 83.427 kb on + strand at 83.428 kb on - strand at 83.428 kb on - strand at 83.428 kb on - strand at 83.428 kb on - strand at 83.431 kb on + strand at 83.432 kb on - strand at 83.532 kb on + strand at 83.532 kb on + strand at 83.532 kb on + strand at 83.532 kb on + strand at 83.532 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 37C remove 81,387 - +1.4 81,444 + -0.4 81,448 + -0.8 81,568 + -0.1 81,569 - +0.2 81,653 + -0.7 81,682 - -0.2 81,833 + -0.1 81,912 - +0.0 81,912 - -0.1 81,980 + -0.1 81,981 - -0.2 82,023 + -0.3 82,023 + +0.3 82,112 + +0.8 82,112 + +0.2 82,388 - BPHYT_RS00325 0.37 -0.7 82,503 + BPHYT_RS00325 0.87 -0.7 82,547 + +1.2 82,548 - +0.3 82,795 + +0.1 82,796 - +0.2 82,854 + -0.2 82,855 - +0.1 82,932 + +1.3 83,283 + +0.9 83,283 + -0.1 83,283 + -1.4 83,283 + -0.4 83,386 + +0.1 83,386 + -1.1 83,427 + +0.0 83,427 + +0.2 83,428 - -0.0 83,428 - -0.2 83,428 - -0.1 83,428 - +0.6 83,431 + -0.3 83,432 - -1.1 83,532 + -0.7 83,532 + +0.2 83,532 + -0.3 83,532 + +0.6 83,532 + -0.1
Or see this region's nucleotide sequence