Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36285

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36285 and BPHYT_RS36290 are separated by 302 nucleotides BPHYT_RS36285: BPHYT_RS36285 - hypothetical protein, at 69,573 to 71,189 _RS36285 BPHYT_RS36290: BPHYT_RS36290 - hypothetical protein, at 71,492 to 72,151 _RS36290 Position (kb) 69 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2at 68.584 kb on - strandat 68.617 kb on - strandat 68.617 kb on - strandat 68.617 kb on - strandat 68.617 kb on - strandat 68.670 kb on + strandat 68.671 kb on - strandat 68.683 kb on - strandat 68.685 kb on - strandat 68.685 kb on - strandat 68.720 kb on + strandat 68.721 kb on - strandat 68.918 kb on - strandat 69.223 kb on + strandat 69.224 kb on - strandat 69.264 kb on - strandat 69.312 kb on - strandat 69.390 kb on + strandat 69.391 kb on - strandat 69.391 kb on - strandat 69.393 kb on - strandat 69.393 kb on - strandat 69.511 kb on + strandat 69.512 kb on - strandat 69.881 kb on - strand, within BPHYT_RS36285at 69.889 kb on - strand, within BPHYT_RS36285at 69.971 kb on - strand, within BPHYT_RS36285at 69.971 kb on - strand, within BPHYT_RS36285at 69.976 kb on - strand, within BPHYT_RS36285at 69.976 kb on - strand, within BPHYT_RS36285at 69.983 kb on - strand, within BPHYT_RS36285at 70.157 kb on + strand, within BPHYT_RS36285at 70.252 kb on + strand, within BPHYT_RS36285at 70.274 kb on - strand, within BPHYT_RS36285at 70.310 kb on + strand, within BPHYT_RS36285at 70.311 kb on - strand, within BPHYT_RS36285at 70.311 kb on - strand, within BPHYT_RS36285at 70.349 kb on + strand, within BPHYT_RS36285at 70.434 kb on + strand, within BPHYT_RS36285at 70.435 kb on - strand, within BPHYT_RS36285at 70.577 kb on + strand, within BPHYT_RS36285at 70.578 kb on - strand, within BPHYT_RS36285at 70.611 kb on + strand, within BPHYT_RS36285at 70.612 kb on - strand, within BPHYT_RS36285at 70.677 kb on + strand, within BPHYT_RS36285at 70.677 kb on + strand, within BPHYT_RS36285at 70.678 kb on - strand, within BPHYT_RS36285at 70.709 kb on + strand, within BPHYT_RS36285at 70.783 kb on - strand, within BPHYT_RS36285at 70.783 kb on - strand, within BPHYT_RS36285at 70.783 kb on - strand, within BPHYT_RS36285at 70.860 kb on - strand, within BPHYT_RS36285at 71.008 kb on + strand, within BPHYT_RS36285at 71.024 kb on + strand, within BPHYT_RS36285at 71.059 kb on - strandat 71.059 kb on - strandat 71.059 kb on - strandat 71.059 kb on - strandat 71.152 kb on - strandat 71.152 kb on - strandat 71.405 kb on - strandat 71.499 kb on - strandat 71.550 kb on + strandat 71.588 kb on + strand, within BPHYT_RS36290at 71.589 kb on - strand, within BPHYT_RS36290at 71.618 kb on - strand, within BPHYT_RS36290at 71.618 kb on - strand, within BPHYT_RS36290at 71.666 kb on - strand, within BPHYT_RS36290at 71.666 kb on - strand, within BPHYT_RS36290at 71.666 kb on - strand, within BPHYT_RS36290at 71.811 kb on - strand, within BPHYT_RS36290at 71.811 kb on - strand, within BPHYT_RS36290at 71.868 kb on - strand, within BPHYT_RS36290at 71.868 kb on - strand, within BPHYT_RS36290at 71.870 kb on - strand, within BPHYT_RS36290at 71.870 kb on - strand, within BPHYT_RS36290at 71.870 kb on - strand, within BPHYT_RS36290at 71.898 kb on - strand, within BPHYT_RS36290at 71.898 kb on - strand, within BPHYT_RS36290at 71.904 kb on - strand, within BPHYT_RS36290at 71.904 kb on - strand, within BPHYT_RS36290at 71.904 kb on - strand, within BPHYT_RS36290at 71.910 kb on - strand, within BPHYT_RS36290at 71.910 kb on - strand, within BPHYT_RS36290at 71.910 kb on - strand, within BPHYT_RS36290at 71.913 kb on - strand, within BPHYT_RS36290at 71.943 kb on - strand, within BPHYT_RS36290at 71.952 kb on - strand, within BPHYT_RS36290at 71.952 kb on - strand, within BPHYT_RS36290at 71.952 kb on - strand, within BPHYT_RS36290at 71.952 kb on - strand, within BPHYT_RS36290at 72.027 kb on - strand, within BPHYT_RS36290at 72.114 kb on - strandat 72.114 kb on - strandat 72.114 kb on - strandat 72.114 kb on - strandat 72.123 kb on - strandat 72.126 kb on - strandat 72.126 kb on - strandat 72.126 kb on - strandat 72.126 kb on - strandat 72.170 kb on - strandat 72.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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68,584 - +0.4
68,617 - +0.6
68,617 - +0.3
68,617 - +0.1
68,617 - +0.5
68,670 + -0.2
68,671 - +0.5
68,683 - +0.3
68,685 - +1.5
68,685 - +0.2
68,720 + +0.1
68,721 - -0.1
68,918 - -0.8
69,223 + -1.9
69,224 - +0.5
69,264 - -0.4
69,312 - +0.9
69,390 + -1.7
69,391 - +0.6
69,391 - +0.5
69,393 - -1.0
69,393 - -0.0
69,511 + -0.2
69,512 - +0.4
69,881 - BPHYT_RS36285 0.19 +0.6
69,889 - BPHYT_RS36285 0.20 +1.0
69,971 - BPHYT_RS36285 0.25 -0.1
69,971 - BPHYT_RS36285 0.25 -0.1
69,976 - BPHYT_RS36285 0.25 +0.1
69,976 - BPHYT_RS36285 0.25 -1.5
69,983 - BPHYT_RS36285 0.25 -0.2
70,157 + BPHYT_RS36285 0.36 -0.9
70,252 + BPHYT_RS36285 0.42 -0.2
70,274 - BPHYT_RS36285 0.43 +1.0
70,310 + BPHYT_RS36285 0.46 +1.1
70,311 - BPHYT_RS36285 0.46 +0.1
70,311 - BPHYT_RS36285 0.46 -0.2
70,349 + BPHYT_RS36285 0.48 -0.2
70,434 + BPHYT_RS36285 0.53 -0.6
70,435 - BPHYT_RS36285 0.53 -0.4
70,577 + BPHYT_RS36285 0.62 -1.2
70,578 - BPHYT_RS36285 0.62 -0.4
70,611 + BPHYT_RS36285 0.64 -0.6
70,612 - BPHYT_RS36285 0.64 -1.0
70,677 + BPHYT_RS36285 0.68 +0.7
70,677 + BPHYT_RS36285 0.68 -1.0
70,678 - BPHYT_RS36285 0.68 -0.6
70,709 + BPHYT_RS36285 0.70 +0.0
70,783 - BPHYT_RS36285 0.75 -0.7
70,783 - BPHYT_RS36285 0.75 -0.1
70,783 - BPHYT_RS36285 0.75 -0.3
70,860 - BPHYT_RS36285 0.80 +0.4
71,008 + BPHYT_RS36285 0.89 -0.5
71,024 + BPHYT_RS36285 0.90 -2.4
71,059 - +0.5
71,059 - -0.2
71,059 - +0.2
71,059 - +0.1
71,152 - +0.4
71,152 - +0.5
71,405 - +0.6
71,499 - +0.4
71,550 + -1.3
71,588 + BPHYT_RS36290 0.15 +0.2
71,589 - BPHYT_RS36290 0.15 +0.1
71,618 - BPHYT_RS36290 0.19 +0.1
71,618 - BPHYT_RS36290 0.19 -1.1
71,666 - BPHYT_RS36290 0.26 +0.4
71,666 - BPHYT_RS36290 0.26 +0.6
71,666 - BPHYT_RS36290 0.26 +0.4
71,811 - BPHYT_RS36290 0.48 +0.2
71,811 - BPHYT_RS36290 0.48 +0.6
71,868 - BPHYT_RS36290 0.57 -0.1
71,868 - BPHYT_RS36290 0.57 -0.7
71,870 - BPHYT_RS36290 0.57 +0.4
71,870 - BPHYT_RS36290 0.57 +0.2
71,870 - BPHYT_RS36290 0.57 -0.2
71,898 - BPHYT_RS36290 0.62 +0.7
71,898 - BPHYT_RS36290 0.62 +2.4
71,904 - BPHYT_RS36290 0.62 +0.6
71,904 - BPHYT_RS36290 0.62 -0.1
71,904 - BPHYT_RS36290 0.62 -0.2
71,910 - BPHYT_RS36290 0.63 -0.3
71,910 - BPHYT_RS36290 0.63 +0.6
71,910 - BPHYT_RS36290 0.63 +0.3
71,913 - BPHYT_RS36290 0.64 +1.0
71,943 - BPHYT_RS36290 0.68 -0.3
71,952 - BPHYT_RS36290 0.70 +0.3
71,952 - BPHYT_RS36290 0.70 -0.4
71,952 - BPHYT_RS36290 0.70 +0.2
71,952 - BPHYT_RS36290 0.70 -0.1
72,027 - BPHYT_RS36290 0.81 +0.4
72,114 - -1.2
72,114 - -0.9
72,114 - -0.8
72,114 - +0.1
72,123 - +0.3
72,126 - +0.2
72,126 - -0.4
72,126 - +0.8
72,126 - -0.3
72,170 - +0.8
72,170 - +0.3

Or see this region's nucleotide sequence