Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35570 and BPHYT_RS35575 are separated by 177 nucleotides BPHYT_RS35575 and BPHYT_RS35580 are separated by 105 nucleotides BPHYT_RS35580 and BPHYT_RS35585 are separated by 259 nucleotides BPHYT_RS35585 and BPHYT_RS35590 are separated by 49 nucleotides
BPHYT_RS35570: BPHYT_RS35570 - hypothetical protein, at 3,575,888 to 3,576,139
_RS35570
BPHYT_RS35575: BPHYT_RS35575 - transcriptional regulator, at 3,576,317 to 3,576,775
_RS35575
BPHYT_RS35580: BPHYT_RS35580 - hypothetical protein, at 3,576,881 to 3,577,303
_RS35580
BPHYT_RS35585: BPHYT_RS35585 - hypothetical protein, at 3,577,563 to 3,577,874
_RS35585
BPHYT_RS35590: BPHYT_RS35590 - tryptophanyl-tRNA synthetase, at 3,577,924 to 3,578,952
_RS35590
Position (kb) 3576
3577
3578 Strain fitness (log2 ratio) -1
0
1 at 3576.075 kb on - strand, within BPHYT_RS35570 at 3576.081 kb on + strand, within BPHYT_RS35570 at 3576.231 kb on + strand at 3576.571 kb on - strand, within BPHYT_RS35575 at 3576.654 kb on + strand, within BPHYT_RS35575 at 3576.655 kb on - strand, within BPHYT_RS35575 at 3576.655 kb on - strand, within BPHYT_RS35575 at 3576.764 kb on + strand at 3576.797 kb on + strand at 3576.819 kb on + strand at 3576.819 kb on + strand at 3576.822 kb on - strand at 3576.822 kb on - strand at 3576.882 kb on + strand at 3576.883 kb on - strand at 3576.883 kb on - strand at 3576.921 kb on + strand at 3577.078 kb on + strand, within BPHYT_RS35580 at 3577.078 kb on + strand, within BPHYT_RS35580 at 3577.119 kb on + strand, within BPHYT_RS35580 at 3577.321 kb on - strand at 3577.439 kb on + strand at 3577.570 kb on + strand at 3577.570 kb on + strand at 3577.570 kb on + strand at 3577.571 kb on - strand at 3577.744 kb on + strand, within BPHYT_RS35585 at 3577.744 kb on + strand, within BPHYT_RS35585 at 3577.747 kb on - strand, within BPHYT_RS35585 at 3577.872 kb on + strand at 3577.873 kb on - strand at 3578.265 kb on - strand, within BPHYT_RS35590 at 3578.265 kb on - strand, within BPHYT_RS35590 at 3578.265 kb on - strand, within BPHYT_RS35590
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 3,576,075 - BPHYT_RS35570 0.74 +1.2 3,576,081 + BPHYT_RS35570 0.77 -0.5 3,576,231 + -0.4 3,576,571 - BPHYT_RS35575 0.55 +0.9 3,576,654 + BPHYT_RS35575 0.73 +0.4 3,576,655 - BPHYT_RS35575 0.74 +1.1 3,576,655 - BPHYT_RS35575 0.74 +0.7 3,576,764 + +0.9 3,576,797 + +0.3 3,576,819 + -0.3 3,576,819 + +0.2 3,576,822 - +0.2 3,576,822 - +1.1 3,576,882 + +0.1 3,576,883 - -0.3 3,576,883 - +0.6 3,576,921 + +0.2 3,577,078 + BPHYT_RS35580 0.47 -0.6 3,577,078 + BPHYT_RS35580 0.47 +0.3 3,577,119 + BPHYT_RS35580 0.56 +0.9 3,577,321 - -1.7 3,577,439 + -0.3 3,577,570 + -0.8 3,577,570 + +1.1 3,577,570 + +0.2 3,577,571 - +1.4 3,577,744 + BPHYT_RS35585 0.58 +0.1 3,577,744 + BPHYT_RS35585 0.58 +0.7 3,577,747 - BPHYT_RS35585 0.59 +0.2 3,577,872 + +0.8 3,577,873 - +0.6 3,578,265 - BPHYT_RS35590 0.33 -0.2 3,578,265 - BPHYT_RS35590 0.33 -0.4 3,578,265 - BPHYT_RS35590 0.33 +0.2
Or see this region's nucleotide sequence