Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS35105 and BPHYT_RS35110 are separated by 22 nucleotides BPHYT_RS35110 and BPHYT_RS35115 are separated by 146 nucleotides BPHYT_RS35115 and BPHYT_RS35120 are separated by 59 nucleotides BPHYT_RS35120 and BPHYT_RS35125 are separated by 209 nucleotides
BPHYT_RS35105: BPHYT_RS35105 - succinylglutamate desuccinylase/aspartoacylase, at 3,477,069 to 3,478,184
_RS35105
BPHYT_RS35110: BPHYT_RS35110 - cupin, at 3,478,207 to 3,478,476
_RS35110
BPHYT_RS35115: BPHYT_RS35115 - phospholipase C, at 3,478,623 to 3,480,776
_RS35115
BPHYT_RS35120: BPHYT_RS35120 - hypothetical protein, at 3,480,836 to 3,481,150
_RS35120
BPHYT_RS35125: BPHYT_RS35125 - glycogen-debranching protein, at 3,481,360 to 3,483,348
_RS35125
Position (kb) 3478
3479
3480
3481 Strain fitness (log2 ratio) -1
0
1
2
3 at 3477.856 kb on - strand, within BPHYT_RS35105 at 3477.907 kb on + strand, within BPHYT_RS35105 at 3477.910 kb on + strand, within BPHYT_RS35105 at 3478.234 kb on + strand, within BPHYT_RS35110 at 3478.664 kb on + strand at 3479.053 kb on + strand, within BPHYT_RS35115 at 3479.117 kb on - strand, within BPHYT_RS35115 at 3479.149 kb on + strand, within BPHYT_RS35115 at 3479.960 kb on - strand, within BPHYT_RS35115 at 3480.587 kb on - strand at 3480.868 kb on - strand, within BPHYT_RS35120 at 3481.695 kb on - strand, within BPHYT_RS35125
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 3,477,856 - BPHYT_RS35105 0.71 +0.7 3,477,907 + BPHYT_RS35105 0.75 +0.2 3,477,910 + BPHYT_RS35105 0.75 +0.6 3,478,234 + BPHYT_RS35110 0.10 +0.8 3,478,664 + -0.0 3,479,053 + BPHYT_RS35115 0.20 +0.4 3,479,117 - BPHYT_RS35115 0.23 -0.8 3,479,149 + BPHYT_RS35115 0.24 +1.4 3,479,960 - BPHYT_RS35115 0.62 +2.8 3,480,587 - -0.5 3,480,868 - BPHYT_RS35120 0.10 +0.6 3,481,695 - BPHYT_RS35125 0.17 -0.3
Or see this region's nucleotide sequence