Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33435 and BPHYT_RS33440 are separated by 192 nucleotides BPHYT_RS33440 and BPHYT_RS33445 are separated by 26 nucleotides
BPHYT_RS33435: BPHYT_RS33435 - hypothetical protein, at 3,088,295 to 3,089,332
_RS33435
BPHYT_RS33440: BPHYT_RS33440 - LysR family transcriptional regulator, at 3,089,525 to 3,090,433
_RS33440
BPHYT_RS33445: BPHYT_RS33445 - 4-hydroxyphenylpyruvate dioxygenase, at 3,090,460 to 3,091,593
_RS33445
Position (kb) 3089
3090
3091 Strain fitness (log2 ratio) -1
0
1
2 at 3088.664 kb on - strand, within BPHYT_RS33435 at 3088.670 kb on + strand, within BPHYT_RS33435 at 3088.670 kb on + strand, within BPHYT_RS33435 at 3088.671 kb on - strand, within BPHYT_RS33435 at 3088.671 kb on - strand, within BPHYT_RS33435 at 3088.671 kb on - strand, within BPHYT_RS33435 at 3089.089 kb on - strand, within BPHYT_RS33435 at 3089.089 kb on - strand, within BPHYT_RS33435 at 3089.332 kb on + strand at 3089.369 kb on - strand at 3089.435 kb on - strand at 3089.630 kb on - strand, within BPHYT_RS33440 at 3089.630 kb on - strand, within BPHYT_RS33440 at 3089.708 kb on + strand, within BPHYT_RS33440 at 3089.708 kb on + strand, within BPHYT_RS33440 at 3089.708 kb on + strand, within BPHYT_RS33440 at 3089.709 kb on - strand, within BPHYT_RS33440 at 3089.709 kb on - strand, within BPHYT_RS33440 at 3090.303 kb on - strand, within BPHYT_RS33440 at 3090.305 kb on + strand, within BPHYT_RS33440 at 3090.305 kb on + strand, within BPHYT_RS33440 at 3090.306 kb on - strand, within BPHYT_RS33440 at 3090.306 kb on - strand, within BPHYT_RS33440 at 3090.306 kb on - strand, within BPHYT_RS33440 at 3090.824 kb on + strand, within BPHYT_RS33445 at 3090.825 kb on - strand, within BPHYT_RS33445 at 3090.825 kb on - strand, within BPHYT_RS33445 at 3090.825 kb on - strand at 3091.172 kb on + strand, within BPHYT_RS33445 at 3091.172 kb on + strand, within BPHYT_RS33445 at 3091.172 kb on + strand, within BPHYT_RS33445 at 3091.173 kb on - strand, within BPHYT_RS33445 at 3091.173 kb on - strand, within BPHYT_RS33445 at 3091.176 kb on + strand, within BPHYT_RS33445 at 3091.176 kb on + strand, within BPHYT_RS33445 at 3091.176 kb on + strand, within BPHYT_RS33445 at 3091.177 kb on - strand, within BPHYT_RS33445 at 3091.177 kb on - strand, within BPHYT_RS33445 at 3091.177 kb on - strand, within BPHYT_RS33445 at 3091.378 kb on - strand, within BPHYT_RS33445 at 3091.425 kb on + strand, within BPHYT_RS33445
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 3,088,664 - BPHYT_RS33435 0.36 +1.3 3,088,670 + BPHYT_RS33435 0.36 +0.4 3,088,670 + BPHYT_RS33435 0.36 -0.5 3,088,671 - BPHYT_RS33435 0.36 +2.0 3,088,671 - BPHYT_RS33435 0.36 +0.5 3,088,671 - BPHYT_RS33435 0.36 +0.9 3,089,089 - BPHYT_RS33435 0.76 +0.2 3,089,089 - BPHYT_RS33435 0.76 -0.1 3,089,332 + -1.2 3,089,369 - -1.2 3,089,435 - +1.1 3,089,630 - BPHYT_RS33440 0.12 -0.6 3,089,630 - BPHYT_RS33440 0.12 -0.4 3,089,708 + BPHYT_RS33440 0.20 -0.0 3,089,708 + BPHYT_RS33440 0.20 -1.2 3,089,708 + BPHYT_RS33440 0.20 +0.0 3,089,709 - BPHYT_RS33440 0.20 -0.7 3,089,709 - BPHYT_RS33440 0.20 +0.1 3,090,303 - BPHYT_RS33440 0.86 +0.2 3,090,305 + BPHYT_RS33440 0.86 -0.0 3,090,305 + BPHYT_RS33440 0.86 -0.9 3,090,306 - BPHYT_RS33440 0.86 +0.4 3,090,306 - BPHYT_RS33440 0.86 +1.1 3,090,306 - BPHYT_RS33440 0.86 +0.5 3,090,824 + BPHYT_RS33445 0.32 -0.1 3,090,825 - BPHYT_RS33445 0.32 -0.1 3,090,825 - BPHYT_RS33445 0.32 +0.2 3,090,825 - +0.3 3,091,172 + BPHYT_RS33445 0.63 -0.5 3,091,172 + BPHYT_RS33445 0.63 +0.9 3,091,172 + BPHYT_RS33445 0.63 -0.7 3,091,173 - BPHYT_RS33445 0.63 +0.7 3,091,173 - BPHYT_RS33445 0.63 +0.6 3,091,176 + BPHYT_RS33445 0.63 -0.4 3,091,176 + BPHYT_RS33445 0.63 -1.2 3,091,176 + BPHYT_RS33445 0.63 +1.6 3,091,177 - BPHYT_RS33445 0.63 +0.6 3,091,177 - BPHYT_RS33445 0.63 -0.1 3,091,177 - BPHYT_RS33445 0.63 +0.2 3,091,378 - BPHYT_RS33445 0.81 -0.1 3,091,425 + BPHYT_RS33445 0.85 +0.3
Or see this region's nucleotide sequence