Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33430 and BPHYT_RS33435 are separated by 39 nucleotides BPHYT_RS33435 and BPHYT_RS33440 are separated by 192 nucleotides
BPHYT_RS33430: BPHYT_RS33430 - dimethylmenaquinone methyltransferase, at 3,085,256 to 3,088,255
_RS33430
BPHYT_RS33435: BPHYT_RS33435 - hypothetical protein, at 3,088,295 to 3,089,332
_RS33435
BPHYT_RS33440: BPHYT_RS33440 - LysR family transcriptional regulator, at 3,089,525 to 3,090,433
_RS33440
Position (kb) 3088
3089
3090 Strain fitness (log2 ratio) -1
0
1
2 at 3087.309 kb on + strand, within BPHYT_RS33430 at 3087.310 kb on - strand, within BPHYT_RS33430 at 3087.519 kb on + strand, within BPHYT_RS33430 at 3087.520 kb on - strand, within BPHYT_RS33430 at 3087.873 kb on + strand, within BPHYT_RS33430 at 3087.874 kb on - strand, within BPHYT_RS33430 at 3088.060 kb on - strand at 3088.297 kb on - strand at 3088.297 kb on - strand at 3088.417 kb on - strand, within BPHYT_RS33435 at 3088.495 kb on - strand, within BPHYT_RS33435 at 3088.495 kb on - strand, within BPHYT_RS33435 at 3088.664 kb on - strand, within BPHYT_RS33435 at 3088.670 kb on + strand, within BPHYT_RS33435 at 3088.670 kb on + strand, within BPHYT_RS33435 at 3088.671 kb on - strand, within BPHYT_RS33435 at 3088.671 kb on - strand, within BPHYT_RS33435 at 3088.671 kb on - strand, within BPHYT_RS33435 at 3089.089 kb on - strand, within BPHYT_RS33435 at 3089.089 kb on - strand, within BPHYT_RS33435 at 3089.332 kb on + strand at 3089.369 kb on - strand at 3089.435 kb on - strand at 3089.630 kb on - strand, within BPHYT_RS33440 at 3089.630 kb on - strand, within BPHYT_RS33440 at 3089.708 kb on + strand, within BPHYT_RS33440 at 3089.708 kb on + strand, within BPHYT_RS33440 at 3089.708 kb on + strand, within BPHYT_RS33440 at 3089.709 kb on - strand, within BPHYT_RS33440 at 3089.709 kb on - strand, within BPHYT_RS33440 at 3090.303 kb on - strand, within BPHYT_RS33440 at 3090.305 kb on + strand, within BPHYT_RS33440 at 3090.305 kb on + strand, within BPHYT_RS33440 at 3090.306 kb on - strand, within BPHYT_RS33440 at 3090.306 kb on - strand, within BPHYT_RS33440 at 3090.306 kb on - strand, within BPHYT_RS33440
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 3,087,309 + BPHYT_RS33430 0.68 +1.2 3,087,310 - BPHYT_RS33430 0.68 -0.2 3,087,519 + BPHYT_RS33430 0.75 +0.2 3,087,520 - BPHYT_RS33430 0.75 +1.2 3,087,873 + BPHYT_RS33430 0.87 -1.1 3,087,874 - BPHYT_RS33430 0.87 -0.7 3,088,060 - -0.9 3,088,297 - +0.1 3,088,297 - +0.2 3,088,417 - BPHYT_RS33435 0.12 +1.0 3,088,495 - BPHYT_RS33435 0.19 +0.1 3,088,495 - BPHYT_RS33435 0.19 +0.6 3,088,664 - BPHYT_RS33435 0.36 +1.3 3,088,670 + BPHYT_RS33435 0.36 +0.4 3,088,670 + BPHYT_RS33435 0.36 -0.5 3,088,671 - BPHYT_RS33435 0.36 +2.0 3,088,671 - BPHYT_RS33435 0.36 +0.5 3,088,671 - BPHYT_RS33435 0.36 +0.9 3,089,089 - BPHYT_RS33435 0.76 +0.2 3,089,089 - BPHYT_RS33435 0.76 -0.1 3,089,332 + -1.2 3,089,369 - -1.2 3,089,435 - +1.1 3,089,630 - BPHYT_RS33440 0.12 -0.6 3,089,630 - BPHYT_RS33440 0.12 -0.4 3,089,708 + BPHYT_RS33440 0.20 -0.0 3,089,708 + BPHYT_RS33440 0.20 -1.2 3,089,708 + BPHYT_RS33440 0.20 +0.0 3,089,709 - BPHYT_RS33440 0.20 -0.7 3,089,709 - BPHYT_RS33440 0.20 +0.1 3,090,303 - BPHYT_RS33440 0.86 +0.2 3,090,305 + BPHYT_RS33440 0.86 -0.0 3,090,305 + BPHYT_RS33440 0.86 -0.9 3,090,306 - BPHYT_RS33440 0.86 +0.4 3,090,306 - BPHYT_RS33440 0.86 +1.1 3,090,306 - BPHYT_RS33440 0.86 +0.5
Or see this region's nucleotide sequence