Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS33425 and BPHYT_RS33430 are separated by 31 nucleotides BPHYT_RS33430 and BPHYT_RS33435 are separated by 39 nucleotides
BPHYT_RS33425: BPHYT_RS33425 - transcriptional regulator, at 3,084,592 to 3,085,224
_RS33425
BPHYT_RS33430: BPHYT_RS33430 - dimethylmenaquinone methyltransferase, at 3,085,256 to 3,088,255
_RS33430
BPHYT_RS33435: BPHYT_RS33435 - hypothetical protein, at 3,088,295 to 3,089,332
_RS33435
Position (kb) 3085
3086
3087
3088
3089 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3084.303 kb on + strand at 3084.327 kb on + strand at 3084.330 kb on + strand at 3085.051 kb on + strand, within BPHYT_RS33425 at 3085.052 kb on - strand, within BPHYT_RS33425 at 3085.064 kb on - strand, within BPHYT_RS33425 at 3085.223 kb on - strand at 3085.223 kb on - strand at 3085.295 kb on - strand at 3085.398 kb on - strand at 3085.757 kb on - strand, within BPHYT_RS33430 at 3085.886 kb on + strand, within BPHYT_RS33430 at 3086.019 kb on + strand, within BPHYT_RS33430 at 3086.020 kb on - strand, within BPHYT_RS33430 at 3086.232 kb on + strand, within BPHYT_RS33430 at 3086.242 kb on + strand, within BPHYT_RS33430 at 3086.249 kb on - strand, within BPHYT_RS33430 at 3086.547 kb on + strand, within BPHYT_RS33430 at 3087.309 kb on + strand, within BPHYT_RS33430 at 3087.310 kb on - strand, within BPHYT_RS33430 at 3087.519 kb on + strand, within BPHYT_RS33430 at 3087.520 kb on - strand, within BPHYT_RS33430 at 3087.873 kb on + strand, within BPHYT_RS33430 at 3087.874 kb on - strand, within BPHYT_RS33430 at 3088.060 kb on - strand at 3088.297 kb on - strand at 3088.297 kb on - strand at 3088.417 kb on - strand, within BPHYT_RS33435 at 3088.495 kb on - strand, within BPHYT_RS33435 at 3088.495 kb on - strand, within BPHYT_RS33435 at 3088.664 kb on - strand, within BPHYT_RS33435 at 3088.670 kb on + strand, within BPHYT_RS33435 at 3088.670 kb on + strand, within BPHYT_RS33435 at 3088.671 kb on - strand, within BPHYT_RS33435 at 3088.671 kb on - strand, within BPHYT_RS33435 at 3088.671 kb on - strand, within BPHYT_RS33435 at 3089.089 kb on - strand, within BPHYT_RS33435 at 3089.089 kb on - strand, within BPHYT_RS33435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 3,084,303 + -3.0 3,084,327 + +0.3 3,084,330 + -0.3 3,085,051 + BPHYT_RS33425 0.73 +0.1 3,085,052 - BPHYT_RS33425 0.73 -0.1 3,085,064 - BPHYT_RS33425 0.75 -0.1 3,085,223 - +1.1 3,085,223 - +1.0 3,085,295 - +1.2 3,085,398 - -1.7 3,085,757 - BPHYT_RS33430 0.17 -0.7 3,085,886 + BPHYT_RS33430 0.21 +0.0 3,086,019 + BPHYT_RS33430 0.25 -0.3 3,086,020 - BPHYT_RS33430 0.25 -0.9 3,086,232 + BPHYT_RS33430 0.33 -0.4 3,086,242 + BPHYT_RS33430 0.33 -0.1 3,086,249 - BPHYT_RS33430 0.33 -0.2 3,086,547 + BPHYT_RS33430 0.43 +0.0 3,087,309 + BPHYT_RS33430 0.68 +1.2 3,087,310 - BPHYT_RS33430 0.68 -0.2 3,087,519 + BPHYT_RS33430 0.75 +0.2 3,087,520 - BPHYT_RS33430 0.75 +1.2 3,087,873 + BPHYT_RS33430 0.87 -1.1 3,087,874 - BPHYT_RS33430 0.87 -0.7 3,088,060 - -0.9 3,088,297 - +0.1 3,088,297 - +0.2 3,088,417 - BPHYT_RS33435 0.12 +1.0 3,088,495 - BPHYT_RS33435 0.19 +0.1 3,088,495 - BPHYT_RS33435 0.19 +0.6 3,088,664 - BPHYT_RS33435 0.36 +1.3 3,088,670 + BPHYT_RS33435 0.36 +0.4 3,088,670 + BPHYT_RS33435 0.36 -0.5 3,088,671 - BPHYT_RS33435 0.36 +2.0 3,088,671 - BPHYT_RS33435 0.36 +0.5 3,088,671 - BPHYT_RS33435 0.36 +0.9 3,089,089 - BPHYT_RS33435 0.76 +0.2 3,089,089 - BPHYT_RS33435 0.76 -0.1
Or see this region's nucleotide sequence