Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31365

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31360 and BPHYT_RS31365 are separated by 333 nucleotidesBPHYT_RS31365 and BPHYT_RS31370 are separated by 269 nucleotides BPHYT_RS31360: BPHYT_RS31360 - ATP-dependent DNA helicase RecQ, at 2,589,842 to 2,591,608 _RS31360 BPHYT_RS31365: BPHYT_RS31365 - hypothetical protein, at 2,591,942 to 2,592,703 _RS31365 BPHYT_RS31370: BPHYT_RS31370 - hypothetical protein, at 2,592,973 to 2,593,179 _RS31370 Position (kb) 2591 2592 2593Strain fitness (log2 ratio) -1 0 1at 2591.095 kb on + strand, within BPHYT_RS31360at 2591.329 kb on + strand, within BPHYT_RS31360at 2591.944 kb on - strandat 2591.980 kb on + strandat 2591.981 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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2,591,095 + BPHYT_RS31360 0.71 -1.0
2,591,329 + BPHYT_RS31360 0.84 -0.4
2,591,944 - +0.3
2,591,980 + -0.4
2,591,981 - -0.5

Or see this region's nucleotide sequence