Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28675

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28670 and BPHYT_RS28675 are separated by 77 nucleotidesBPHYT_RS28675 and BPHYT_RS28680 are separated by 120 nucleotidesBPHYT_RS28680 and BPHYT_RS28685 are separated by 28 nucleotides BPHYT_RS28670: BPHYT_RS28670 - MFS transporter, at 1,985,437 to 1,986,801 _RS28670 BPHYT_RS28675: BPHYT_RS28675 - hypothetical protein, at 1,986,879 to 1,987,544 _RS28675 BPHYT_RS28680: BPHYT_RS28680 - porin, at 1,987,665 to 1,988,180 _RS28680 BPHYT_RS28685: BPHYT_RS28685 - GntR family transcriptional regulator, at 1,988,209 to 1,989,660 _RS28685 Position (kb) 1986 1987 1988Strain fitness (log2 ratio) -1 0 1 2 3at 1986.160 kb on + strand, within BPHYT_RS28670at 1986.161 kb on - strand, within BPHYT_RS28670at 1986.242 kb on - strand, within BPHYT_RS28670at 1986.678 kb on + strandat 1986.945 kb on + strandat 1987.060 kb on - strand, within BPHYT_RS28675at 1987.181 kb on + strand, within BPHYT_RS28675at 1987.181 kb on + strand, within BPHYT_RS28675at 1987.772 kb on - strand, within BPHYT_RS28680at 1987.869 kb on + strand, within BPHYT_RS28680

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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1,986,160 + BPHYT_RS28670 0.53 +0.1
1,986,161 - BPHYT_RS28670 0.53 -0.4
1,986,242 - BPHYT_RS28670 0.59 +3.2
1,986,678 + -0.5
1,986,945 + -0.2
1,987,060 - BPHYT_RS28675 0.27 -1.7
1,987,181 + BPHYT_RS28675 0.45 -1.3
1,987,181 + BPHYT_RS28675 0.45 -0.5
1,987,772 - BPHYT_RS28680 0.21 -0.1
1,987,869 + BPHYT_RS28680 0.40 -0.9

Or see this region's nucleotide sequence