Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27815 and BPHYT_RS27820 are separated by 209 nucleotides BPHYT_RS27820 and BPHYT_RS27825 are separated by 1 nucleotides BPHYT_RS27825 and BPHYT_RS27830 are separated by 138 nucleotides
BPHYT_RS27815: BPHYT_RS27815 - transporter, at 1,802,616 to 1,804,364
_RS27815
BPHYT_RS27820: BPHYT_RS27820 - membrane protein, at 1,804,574 to 1,805,005
_RS27820
BPHYT_RS27825: BPHYT_RS27825 - hypothetical protein, at 1,805,007 to 1,805,441
_RS27825
BPHYT_RS27830: BPHYT_RS27830 - universal stress protein A, at 1,805,580 to 1,806,533
_RS27830
Position (kb) 1805
1806 Strain fitness (log2 ratio) -1
0
1 at 1804.327 kb on - strand at 1804.362 kb on + strand at 1804.363 kb on - strand at 1805.499 kb on + strand at 1805.500 kb on - strand at 1805.500 kb on - strand at 1805.913 kb on + strand, within BPHYT_RS27830 at 1805.920 kb on + strand, within BPHYT_RS27830 at 1806.047 kb on - strand, within BPHYT_RS27830 at 1806.437 kb on - strand, within BPHYT_RS27830
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,804,327 - +0.6 1,804,362 + -0.6 1,804,363 - -0.2 1,805,499 + +0.3 1,805,500 - +0.6 1,805,500 - +0.5 1,805,913 + BPHYT_RS27830 0.35 -0.8 1,805,920 + BPHYT_RS27830 0.36 +0.8 1,806,047 - BPHYT_RS27830 0.49 -0.5 1,806,437 - BPHYT_RS27830 0.90 +1.2
Or see this region's nucleotide sequence