Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27400

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27390 and BPHYT_RS27395 are separated by 25 nucleotidesBPHYT_RS27395 and BPHYT_RS27400 are separated by 68 nucleotidesBPHYT_RS27400 and BPHYT_RS27405 are separated by 70 nucleotides BPHYT_RS27390: BPHYT_RS27390 - hydroxyacid dehydrogenase, at 1,718,647 to 1,719,708 _RS27390 BPHYT_RS27395: BPHYT_RS27395 - N-acetyltransferase GCN5, at 1,719,734 to 1,720,636 _RS27395 BPHYT_RS27400: BPHYT_RS27400 - D-amino acid oxidase, at 1,720,705 to 1,722,030 _RS27400 BPHYT_RS27405: BPHYT_RS27405 - aldehyde dehydrogenase, at 1,722,101 to 1,723,558 _RS27405 Position (kb) 1720 1721 1722 1723Strain fitness (log2 ratio) -1 0 1 2at 1719.837 kb on + strand, within BPHYT_RS27395at 1721.504 kb on - strand, within BPHYT_RS27400at 1722.423 kb on - strand, within BPHYT_RS27405

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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1,719,837 + BPHYT_RS27395 0.11 +1.8
1,721,504 - BPHYT_RS27400 0.60 -0.2
1,722,423 - BPHYT_RS27405 0.22 -0.9

Or see this region's nucleotide sequence