Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27385 and BPHYT_RS27390 are separated by 281 nucleotides BPHYT_RS27390 and BPHYT_RS27395 are separated by 25 nucleotides BPHYT_RS27395 and BPHYT_RS27400 are separated by 68 nucleotides
BPHYT_RS27385: BPHYT_RS27385 - DeoR family transcriptional regulator, at 1,716,884 to 1,718,365
_RS27385
BPHYT_RS27390: BPHYT_RS27390 - hydroxyacid dehydrogenase, at 1,718,647 to 1,719,708
_RS27390
BPHYT_RS27395: BPHYT_RS27395 - N-acetyltransferase GCN5, at 1,719,734 to 1,720,636
_RS27395
BPHYT_RS27400: BPHYT_RS27400 - D-amino acid oxidase, at 1,720,705 to 1,722,030
_RS27400
Position (kb) 1718
1719
1720 Strain fitness (log2 ratio) -1
0
1
2 at 1717.670 kb on - strand, within BPHYT_RS27385 at 1717.682 kb on - strand, within BPHYT_RS27385 at 1718.014 kb on + strand, within BPHYT_RS27385 at 1718.015 kb on - strand, within BPHYT_RS27385 at 1718.018 kb on + strand, within BPHYT_RS27385 at 1718.018 kb on + strand, within BPHYT_RS27385 at 1718.303 kb on - strand at 1718.321 kb on + strand at 1718.322 kb on - strand at 1718.644 kb on + strand at 1718.645 kb on - strand at 1718.758 kb on + strand, within BPHYT_RS27390 at 1719.142 kb on + strand, within BPHYT_RS27390 at 1719.143 kb on - strand, within BPHYT_RS27390 at 1719.661 kb on - strand at 1719.837 kb on + strand, within BPHYT_RS27395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,717,670 - BPHYT_RS27385 0.53 +1.8 1,717,682 - BPHYT_RS27385 0.54 +0.6 1,718,014 + BPHYT_RS27385 0.76 -0.2 1,718,015 - BPHYT_RS27385 0.76 +2.4 1,718,018 + BPHYT_RS27385 0.77 -0.1 1,718,018 + BPHYT_RS27385 0.77 +1.8 1,718,303 - +1.0 1,718,321 + +0.5 1,718,322 - +0.7 1,718,644 + -1.4 1,718,645 - -0.8 1,718,758 + BPHYT_RS27390 0.10 -0.0 1,719,142 + BPHYT_RS27390 0.47 +1.5 1,719,143 - BPHYT_RS27390 0.47 +0.2 1,719,661 - +0.4 1,719,837 + BPHYT_RS27395 0.11 +1.8
Or see this region's nucleotide sequence