Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27375 and BPHYT_RS27380 are separated by 8 nucleotides BPHYT_RS27380 and BPHYT_RS27385 are separated by 200 nucleotides BPHYT_RS27385 and BPHYT_RS27390 are separated by 281 nucleotides
BPHYT_RS27375: BPHYT_RS27375 - shikimate 5-dehydrogenase, at 1,715,734 to 1,716,567
_RS27375
BPHYT_RS27380: BPHYT_RS27380 - 3-dehydroquinate dehydratase, at 1,716,576 to 1,716,683
_RS27380
BPHYT_RS27385: BPHYT_RS27385 - DeoR family transcriptional regulator, at 1,716,884 to 1,718,365
_RS27385
BPHYT_RS27390: BPHYT_RS27390 - hydroxyacid dehydrogenase, at 1,718,647 to 1,719,708
_RS27390
Position (kb) 1716
1717
1718
1719 Strain fitness (log2 ratio) -1
0
1
2 at 1716.265 kb on + strand, within BPHYT_RS27375 at 1716.881 kb on - strand at 1716.918 kb on + strand at 1717.510 kb on - strand, within BPHYT_RS27385 at 1717.670 kb on - strand, within BPHYT_RS27385 at 1717.682 kb on - strand, within BPHYT_RS27385 at 1718.014 kb on + strand, within BPHYT_RS27385 at 1718.015 kb on - strand, within BPHYT_RS27385 at 1718.018 kb on + strand, within BPHYT_RS27385 at 1718.018 kb on + strand, within BPHYT_RS27385 at 1718.303 kb on - strand at 1718.321 kb on + strand at 1718.322 kb on - strand at 1718.644 kb on + strand at 1718.645 kb on - strand at 1718.758 kb on + strand, within BPHYT_RS27390 at 1719.142 kb on + strand, within BPHYT_RS27390 at 1719.143 kb on - strand, within BPHYT_RS27390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,716,265 + BPHYT_RS27375 0.64 +0.1 1,716,881 - +0.0 1,716,918 + -1.4 1,717,510 - BPHYT_RS27385 0.42 -0.3 1,717,670 - BPHYT_RS27385 0.53 +1.8 1,717,682 - BPHYT_RS27385 0.54 +0.6 1,718,014 + BPHYT_RS27385 0.76 -0.2 1,718,015 - BPHYT_RS27385 0.76 +2.4 1,718,018 + BPHYT_RS27385 0.77 -0.1 1,718,018 + BPHYT_RS27385 0.77 +1.8 1,718,303 - +1.0 1,718,321 + +0.5 1,718,322 - +0.7 1,718,644 + -1.4 1,718,645 - -0.8 1,718,758 + BPHYT_RS27390 0.10 -0.0 1,719,142 + BPHYT_RS27390 0.47 +1.5 1,719,143 - BPHYT_RS27390 0.47 +0.2
Or see this region's nucleotide sequence