Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27370 and BPHYT_RS27375 overlap by 1 nucleotides BPHYT_RS27375 and BPHYT_RS27380 are separated by 8 nucleotides BPHYT_RS27380 and BPHYT_RS27385 are separated by 200 nucleotides
BPHYT_RS27370: BPHYT_RS27370 - CoA transferase, at 1,714,514 to 1,715,734
_RS27370
BPHYT_RS27375: BPHYT_RS27375 - shikimate 5-dehydrogenase, at 1,715,734 to 1,716,567
_RS27375
BPHYT_RS27380: BPHYT_RS27380 - 3-dehydroquinate dehydratase, at 1,716,576 to 1,716,683
_RS27380
BPHYT_RS27385: BPHYT_RS27385 - DeoR family transcriptional regulator, at 1,716,884 to 1,718,365
_RS27385
Position (kb) 1716
1717 Strain fitness (log2 ratio) -1
0
1
2 at 1715.856 kb on - strand, within BPHYT_RS27375 at 1716.265 kb on + strand, within BPHYT_RS27375 at 1716.881 kb on - strand at 1716.918 kb on + strand at 1717.510 kb on - strand, within BPHYT_RS27385 at 1717.670 kb on - strand, within BPHYT_RS27385 at 1717.682 kb on - strand, within BPHYT_RS27385
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,715,856 - BPHYT_RS27375 0.15 +0.5 1,716,265 + BPHYT_RS27375 0.64 +0.1 1,716,881 - +0.0 1,716,918 + -1.4 1,717,510 - BPHYT_RS27385 0.42 -0.3 1,717,670 - BPHYT_RS27385 0.53 +1.8 1,717,682 - BPHYT_RS27385 0.54 +0.6
Or see this region's nucleotide sequence