Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27190

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS27185 and BPHYT_RS27190 overlap by 8 nucleotidesBPHYT_RS27190 and BPHYT_RS27195 are separated by 39 nucleotides BPHYT_RS27185: BPHYT_RS27185 - D-ribose transporter ATP-binding protein, at 1,676,338 to 1,677,888 _RS27185 BPHYT_RS27190: BPHYT_RS27190 - sugar ABC transporter permease, at 1,677,881 to 1,678,912 _RS27190 BPHYT_RS27195: BPHYT_RS27195 - LacI family transcriptional regulator, at 1,678,952 to 1,679,899 _RS27195 Position (kb) 1677 1678 1679Strain fitness (log2 ratio) -1 0 1 2at 1676.977 kb on + strand, within BPHYT_RS27185at 1676.977 kb on + strand, within BPHYT_RS27185at 1677.388 kb on + strand, within BPHYT_RS27185at 1677.389 kb on - strand, within BPHYT_RS27185at 1678.603 kb on + strand, within BPHYT_RS27190at 1678.694 kb on + strand, within BPHYT_RS27190at 1678.695 kb on - strand, within BPHYT_RS27190at 1678.910 kb on + strandat 1679.067 kb on - strand, within BPHYT_RS27195at 1679.278 kb on + strand, within BPHYT_RS27195at 1679.484 kb on - strand, within BPHYT_RS27195at 1679.772 kb on - strand, within BPHYT_RS27195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
remove
1,676,977 + BPHYT_RS27185 0.41 +0.0
1,676,977 + BPHYT_RS27185 0.41 +0.8
1,677,388 + BPHYT_RS27185 0.68 -0.3
1,677,389 - BPHYT_RS27185 0.68 +1.3
1,678,603 + BPHYT_RS27190 0.70 -0.4
1,678,694 + BPHYT_RS27190 0.79 -0.7
1,678,695 - BPHYT_RS27190 0.79 +0.2
1,678,910 + -1.4
1,679,067 - BPHYT_RS27195 0.12 +2.1
1,679,278 + BPHYT_RS27195 0.34 +1.8
1,679,484 - BPHYT_RS27195 0.56 -0.8
1,679,772 - BPHYT_RS27195 0.86 -0.0

Or see this region's nucleotide sequence