Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26890 and BPHYT_RS26895 are separated by 151 nucleotides BPHYT_RS26895 and BPHYT_RS26900 are separated by 82 nucleotides BPHYT_RS26900 and BPHYT_RS26905 are separated by 214 nucleotides
BPHYT_RS26890: BPHYT_RS26890 - LysR family transcriptional regulator, at 1,605,269 to 1,606,144
_RS26890
BPHYT_RS26895: BPHYT_RS26895 - nicotinate phosphoribosyltransferase, at 1,606,296 to 1,607,723
_RS26895
BPHYT_RS26900: BPHYT_RS26900 - isoprenylcysteine carboxyl methyltransferase, at 1,607,806 to 1,608,492
_RS26900
BPHYT_RS26905: BPHYT_RS26905 - pilus assembly protein CpaE, at 1,608,707 to 1,609,909
_RS26905
Position (kb) 1606
1607
1608 Strain fitness (log2 ratio) -1
0
1
2 at 1605.567 kb on - strand, within BPHYT_RS26890 at 1605.567 kb on - strand, within BPHYT_RS26890 at 1605.584 kb on + strand, within BPHYT_RS26890 at 1605.594 kb on + strand, within BPHYT_RS26890 at 1605.714 kb on - strand, within BPHYT_RS26890 at 1606.912 kb on - strand, within BPHYT_RS26895 at 1607.054 kb on - strand, within BPHYT_RS26895 at 1607.054 kb on - strand, within BPHYT_RS26895 at 1607.411 kb on - strand, within BPHYT_RS26895 at 1607.597 kb on - strand at 1607.931 kb on - strand, within BPHYT_RS26900 at 1608.350 kb on + strand, within BPHYT_RS26900 at 1608.370 kb on - strand, within BPHYT_RS26900
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,605,567 - BPHYT_RS26890 0.34 -1.0 1,605,567 - BPHYT_RS26890 0.34 -0.2 1,605,584 + BPHYT_RS26890 0.36 -0.2 1,605,594 + BPHYT_RS26890 0.37 +0.0 1,605,714 - BPHYT_RS26890 0.51 -0.9 1,606,912 - BPHYT_RS26895 0.43 +1.4 1,607,054 - BPHYT_RS26895 0.53 +0.3 1,607,054 - BPHYT_RS26895 0.53 +0.6 1,607,411 - BPHYT_RS26895 0.78 +1.9 1,607,597 - -0.8 1,607,931 - BPHYT_RS26900 0.18 -0.3 1,608,350 + BPHYT_RS26900 0.79 -0.2 1,608,370 - BPHYT_RS26900 0.82 +1.3
Or see this region's nucleotide sequence